Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

23670787 .. 23671293

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGAATTTGATGTGCTTAGTGGCAGTACTCATATTTATCATTCAAACTGCAATTTTGCCAACCGAAGCAAATATCGTTGCTCAAACATGTCAAAAAACACCACACCCTCCATTGTGTCTCGCGTCTCTCAAATCCGACCCTCGCAGCGCCCAAGCAGACATATATGGCCTAGCTACCATAACGGTTGATGTGGTGAAGGCAAAGTCCACAACAACTCTGAGCCAAATCAACCAATTGCTTAAGCAAAGCCCAAGGGACAAAGCCTTAATAGATTGTGCTGACAGTTACAACGCAGTTTTAAAAGGTGATGTCCCAGAAGCCTTTGAGGCAATCAATGTAAGAAGACGTATGTTTGCATTGGATGGCATGAATGACGCTGTGAATGAGGCTAATGGATGCGAAAGCAACTTTGCAGGCAGCAGCTCTCATCCTCTGACTAAATTGAATAAAGATGTGGCAGATGTTGCTAGTGTGGCTGCAGCAGTTATTAATCAATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

168

Amino Acids

17.9

Weight (kDa)

6.07

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	26 - 162	1.3e-19	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	30
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	47, 448
AluBI	AGCT	2 cut(s)	176, 426
AluI	AGCT	2 cut(s)	176, 426
Alw26I	GTCTC	2 cut(s)	125, 132
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	5 cut(s)	147, 420, 423, 479, 482
ApoI	RAATTY	1 cut(s)	7
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	208, 320
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	5 cut(s)	159, 432, 435, 466, 494
BccI	CCATC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	125, 132
BfaI	CTAG	2 cut(s)	173, 471
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	5 cut(s)	148, 421, 424, 480, 483
BlsI	GCNGC	5 cut(s)	149, 422, 425, 481, 484
BmcAI	AGTACT	1 cut(s)	30
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	370, 404, 430
BseMII	CTCAG	1 cut(s)	212
BseXI	GCAGC	5 cut(s)	159, 432, 435, 466, 494
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	272, 299
BsmAI	GTCTC	2 cut(s)	125, 132
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	272, 299
BsnI	GGCC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	187, 287
BstAFI	CTTAAG	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	19, 221
BstF5I	GGATG	3 cut(s)	370, 404, 430
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstMAI	GTCTC	2 cut(s)	125, 132
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 467, 476
BstNSI	RCATGY	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	5 cut(s)	159, 432, 435, 466, 494
BstV2I	GAAGAC	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	370, 404, 430
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	152
CseI	GACGC	2 cut(s)	114, 386
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	90, 370
CviJI	RGCY	9 cut(s)	171, 176, 225, 252, 266, 323, 392, 426, 479
CviKI_1	RGCY	9 cut(s)	171, 176, 225, 252, 266, 323, 392, 426, 479
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	19, 221
DraI	TTTAAA	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	93, 373
FaiI	YATR	8 cut(s)	35, 91, 164, 166, 168, 182, 353, 371
FaqI	GGGAC	2 cut(s)	272, 299
FatI	CATG	2 cut(s)	89, 369
Fnu4HI	GCNGC	5 cut(s)	148, 421, 424, 480, 483
FokI	GGATG	3 cut(s)	377, 411, 417
Fsp4HI	GCNGC	5 cut(s)	148, 421, 424, 480, 483
FspBI	CTAG	2 cut(s)	173, 471
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	148, 421, 424, 480, 483
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	171
HgaI	GACGC	2 cut(s)	114, 386
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	93, 373
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HphI	GGTGA	2 cut(s)	208, 320
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	139, 222, 438
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	187, 287
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	4 cut(s)	53, 359, 416, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 467, 476
HpyF3I	CTNAG	2 cut(s)	19, 221
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	93, 373
HspAI	GCGC	1 cut(s)	150
LpnPI	CCDG	2 cut(s)	330, 402
Lsp1109I	GCAGC	5 cut(s)	159, 432, 435, 466, 494
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	173, 471
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	287
MboII	GAAGA	2 cut(s)	16, 357
MfeI	CAATTG	1 cut(s)	236
MluCI	AATT	5 cut(s)	7, 54, 236, 443, 497
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	120, 153, 322, 382, 444
MseI	TTAA	4 cut(s)	243, 269, 302, 492
MspCI	CTTAAG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	329, 467, 476
NlaIII	CATG	2 cut(s)	93, 373
NspI	RCATGY	1 cut(s)	93
PciI	ACATGT	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	149, 422, 425, 481, 484
PscI	ACATGT	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	492
PstI	CTGCAG	1 cut(s)	484
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	4 cut(s)	243, 269, 302, 492
SatI	GCNGC	5 cut(s)	148, 421, 424, 480, 483
ScaI	AGTACT	1 cut(s)	30
SetI	ASST	4 cut(s)	178, 310, 352, 428
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	7, 54, 236, 443, 497
SspMI	CTAG	2 cut(s)	173, 471
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	187, 287
TaiI	ACGT	1 cut(s)	352
TasI	AATT	5 cut(s)	7, 54, 236, 443, 497
TatI	WGTACW	1 cut(s)	28
Tru1I	TTAA	4 cut(s)	243, 269, 302, 492
Tru9I	TTAA	4 cut(s)	243, 269, 302, 492
TseI	GCWGC	5 cut(s)	147, 420, 423, 479, 482
TspDTI	ATGAA	2 cut(s)	17, 386
Vha464I	CTTAAG	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	2 cut(s)	173, 471
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.