Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

11879608 .. 11880018

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1150600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCCGGCTTAGGGTTCATCACAGTTGACATGGCCAAGGCTAAAGCAACTGACACCGCGAACAGAATCAACGAGCTGCTTAAGCAGAGCCCCAGTGACCAAACTTTAAAATCTTGTGCTACCTTTTACCATACAATTCTGGTGGCTGATATCCCAGAAGCTAGTCAAGGTTTTAAGTTGGGTAACCCTAAGTTTGCAGAGCAAGGCATGAACGATGCTGCCGGTGCAGCTGAAGCATGTGAAAAGGAATTTTCTGGCAAATCCCCACTTACCGATAAGAACAAAGTTTTCCATGACCTTAGTAGCATAACTGCAACAATTGCCAGGCTAGTGGAGATTTCCAGTGGAGCTATTTGCAATTTGAGCAGGCTTAAGGAATGTTGGATGCAATCGGTTACAAGTGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

137

Amino Acids

14.52

Weight (kDa)

6.09

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	6 - 105	4.3e-08	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AciI	CCGC	1 cut(s)	57
AcoI	YGGCCR	2 cut(s)	3, 33
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	12
AflII	CTTAAG	2 cut(s)	80, 371
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	4 cut(s)	76, 161, 230, 350
AluI	AGCT	4 cut(s)	76, 161, 230, 350
AoxI	GGCC	2 cut(s)	3, 33
ApeKI	GCWGC	3 cut(s)	76, 218, 227
ApoI	RAATTY	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	63, 205, 239
BciT130I	CCWGG	1 cut(s)	325
BfaI	CTAG	2 cut(s)	162, 329
BfrI	CTTAAG	2 cut(s)	80, 371
BisI	GCNGC	3 cut(s)	77, 219, 228
BlsI	GCNGC	3 cut(s)	78, 220, 229
Bme1390I	CCNGG	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	205, 375
BmuI	ACTGGG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse118I	RCCGGY	2 cut(s)	5, 221
Bse1I	ACTGG	2 cut(s)	93, 342
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	93, 342
BseXI	GCAGC	3 cut(s)	63, 205, 239
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	5, 35
BsiSI	CCGG	2 cut(s)	6, 222
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	2 cut(s)	5, 35
Bsp1286I	GDGCHC	1 cut(s)	92
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	5, 35
BspFNI	CGCG	1 cut(s)	59
BspTI	CTTAAG	2 cut(s)	80, 371
BsrFI	RCCGGY	2 cut(s)	5, 221
BsrI	ACTGG	2 cut(s)	93, 342
BssAI	RCCGGY	2 cut(s)	5, 221
BssECI	CCNNGG	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	25
BstAFI	CTTAAG	2 cut(s)	80, 371
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	7, 368
BstDEI	CTNAG	3 cut(s)	10, 189, 299
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	6 cut(s)	82, 224, 227, 233, 320, 363
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	63, 205, 239
BstXI	CCANNNNNNTGG	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	5, 35
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	2 cut(s)	100, 349
Cac8I	GCNNGC	2 cut(s)	7, 368
Cfr10I	RCCGGY	2 cut(s)	5, 221
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	4 cut(s)	31, 208, 237, 293
DdeI	CTNAG	3 cut(s)	10, 189, 299
DraI	TTTAAA	1 cut(s)	108
EaeI	YGGCCR	2 cut(s)	3, 33
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	92
Eco32I	GATATC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	323
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	4 cut(s)	34, 211, 240, 296
FaiI	YATR	6 cut(s)	32, 132, 209, 238, 294, 308
FatI	CATG	4 cut(s)	30, 207, 236, 292
Fnu4HI	GCNGC	3 cut(s)	77, 219, 228
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	77, 219, 228
FspBI	CTAG	2 cut(s)	162, 329
GluI	GCNGC	3 cut(s)	77, 219, 228
HaeIII	GGCC	2 cut(s)	5, 35
HapII	CCGG	2 cut(s)	6, 222
Hin1II	CATG	4 cut(s)	34, 211, 240, 296
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	66, 405
HpaII	CCGG	2 cut(s)	6, 222
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	5 cut(s)	197, 227, 314, 357, 388
HpyF10VI	GCNNNNNNNGC	6 cut(s)	82, 224, 227, 233, 320, 363
HpyF3I	CTNAG	3 cut(s)	10, 189, 299
Hsp92II	CATG	4 cut(s)	34, 211, 240, 296
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	3 cut(s)	63, 205, 239
LweI	GCATC	2 cut(s)	205, 375
MaeI	CTAG	2 cut(s)	162, 329
MaeIII	GTNAC	3 cut(s)	95, 182, 394
MfeI	CAATTG	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	4 cut(s)	135, 248, 318, 358
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	362
Mox20I	TGGCCA	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	4 cut(s)	81, 107, 174, 372
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	230
MspCI	CTTAAG	2 cut(s)	80, 371
MspI	CCGG	2 cut(s)	6, 222
MspR9I	CCNGG	1 cut(s)	325
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	6 cut(s)	82, 224, 227, 233, 320, 363
NaeI	GCCGGC	1 cut(s)	7
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	34, 211, 240, 296
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	66, 405
PkrI	GCNGC	3 cut(s)	78, 220, 229
Psp6I	CCWGG	1 cut(s)	323
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	81, 107, 174, 372
SatI	GCNGC	3 cut(s)	77, 219, 228
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	78, 125, 163, 172, 232, 300, 352
SfaNI	GCATC	2 cut(s)	205, 375
SmlI	CTYRAG	2 cut(s)	80, 371
SmoI	CTYRAG	2 cut(s)	80, 371
Sse9I	AATT	4 cut(s)	135, 248, 318, 358
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	2 cut(s)	162, 329
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	4 cut(s)	135, 248, 318, 358
TfiI	GAWTC	2 cut(s)	66, 405
Tru1I	TTAA	4 cut(s)	81, 107, 174, 372
Tru9I	TTAA	4 cut(s)	81, 107, 174, 372
TscAI	CASTG	2 cut(s)	100, 349
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	3 cut(s)	76, 218, 227
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	7, 224
TspRI	CASTG	2 cut(s)	100, 349
Vha464I	CTTAAG	2 cut(s)	80, 371
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	240
XspI	CTAG	2 cut(s)	162, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.