Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

11775834 .. 11776469

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1150200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGGTCACACAGTAGCATATATGTGTGCACCTTTCAGTTTCTCAACATCATCAACTCTTACATAAGCATCAACAAACTTCTGAAAACATTTTTTGTCTTGCGAAAAATGAGGTACTCAGCATGTCTCATCCAACTAATTTGTCTAGTTCTAGTGTTTCTTCCCCTAAGCCATTGCAGAAGGGCTGTGATCTTTCCAATGGATGCCAATCTAATCGATCAAACCTGCAAAAAAACACCAAACTACAATCTCTGCGTCTCTTCTCTCAAATCGGACCCTCGAAGTGTGAAAGCGGACGTGGCTGGATTAGGGTTCATAACGGTTGACATAGCCAAGGATAAAGCAACTGACACGGCGAACAGAATCAACGAGCTGCTTAAGCAAAGCCCTAGTGACCAACGTTTAAAAACTTGCGCTACCTTTTACCATACAATTCTGGTTGCTGATGTCCCAGAAGCCAGTCAAGGTTTTAAGTTGGGTAACCCTAAGTTTGCAGAGCAAGGCATGAACGACGCTGCCGATGCGACTGAAGCATGTGAAAAGGAATTTTCCAGCAAATCTCCTCTGACCGATAAGAACAAAGTTGTCCATGACCTTAGCAGTATAGCTGCAGCAATTGCTAGGCTTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

212

Amino Acids

23.41

Weight (kDa)

9.0

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	70 - 206	3.8e-21	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AciI	CCGC	1 cut(s)	293
AclI	AACGTT	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	545
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	116
AflII	CTTAAG	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	2 cut(s)	373, 608
AluI	AGCT	2 cut(s)	373, 608
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	131, 262
Alw44I	GTGCAC	1 cut(s)	28
ApaLI	GTGCAC	1 cut(s)	28
ApeKI	GCWGC	4 cut(s)	373, 515, 608, 611
ApoI	RAATTY	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	360, 502, 595, 623
BceAI	ACGGC	1 cut(s)	369
BcoDI	GTCTC	2 cut(s)	131, 262
BfaI	CTAG	4 cut(s)	146, 152, 390, 621
BfmI	CTRYAG	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	4 cut(s)	374, 516, 609, 612
BlsI	GCNGC	4 cut(s)	375, 517, 610, 613
Bme18I	GGWCC	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	276
BmsI	GCATC	3 cut(s)	78, 193, 511
Bpu10I	CCTNAGC	2 cut(s)	167, 596
Bsa29I	ATCGAT	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	129, 208
BseJI	GATNNNNATC	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	4 cut(s)	360, 502, 595, 623
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	434
BsmAI	GTCTC	2 cut(s)	131, 262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	189, 217
BspACI	CCGC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	276
BspMAI	CTGCAG	1 cut(s)	613
BspMI	ACCTGC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	189, 217
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	14, 322
Bst6I	CTCTTC	1 cut(s)	265
BstAFI	CTTAAG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstDEI	CTNAG	4 cut(s)	118, 167, 486, 596
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	129, 208
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	192, 220
BstMAI	GTCTC	2 cut(s)	131, 262
BstMBI	GATC	2 cut(s)	189, 217
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 379, 521, 530, 617
BstNSI	RCATGY	2 cut(s)	126, 537
BstPI	GGTNACC	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	609
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	360, 502, 595, 623
Bsu15I	ATCGAT	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	129, 208
BveI	ACCTGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	216
CseI	GACGC	2 cut(s)	244, 521
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	4 cut(s)	123, 505, 534, 590
CviJI	RGCY	9 cut(s)	171, 185, 302, 332, 373, 387, 458, 608, 625
CviKI_1	RGCY	9 cut(s)	171, 185, 302, 332, 373, 387, 458, 608, 625
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	4 cut(s)	118, 167, 486, 596
DpnI	GATC	2 cut(s)	191, 219
DpnII	GATC	2 cut(s)	189, 217
DraI	TTTAAA	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	549
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	4 cut(s)	126, 508, 537, 593
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	122, 504, 533, 589
Fnu4HI	GCNGC	4 cut(s)	374, 516, 609, 612
FokI	GGATG	2 cut(s)	116, 215
Fsp4HI	GCNGC	4 cut(s)	374, 516, 609, 612
FspBI	CTAG	4 cut(s)	146, 152, 390, 621
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	4 cut(s)	374, 516, 609, 612
HgaI	GACGC	2 cut(s)	244, 521
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	4 cut(s)	126, 508, 537, 593
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	363
Hpy166II	GTNNAC	2 cut(s)	30, 325
Hpy188I	TCNGA	3 cut(s)	84, 274, 567
Hpy8I	GTNNAC	2 cut(s)	30, 325
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	2 cut(s)	14, 322
HpyCH4IV	ACGT	2 cut(s)	297, 400
HpyCH4V	TGCA	5 cut(s)	30, 177, 228, 494, 611
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 379, 521, 530, 617
HpyF3I	CTNAG	4 cut(s)	118, 167, 486, 596
HpySE526I	ACGT	2 cut(s)	297, 400
Hsp92II	CATG	4 cut(s)	126, 508, 537, 593
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	189, 217
LpnPI	CCDG	6 cut(s)	238, 288, 422, 465, 472, 565
Lsp1109I	GCAGC	4 cut(s)	360, 502, 595, 623
LweI	GCATC	3 cut(s)	78, 193, 511
MaeI	CTAG	4 cut(s)	146, 152, 390, 621
MaeII	ACGT	2 cut(s)	297, 400
MaeIII	GTNAC	3 cut(s)	6, 392, 479
MalI	GATC	2 cut(s)	191, 219
MboI	GATC	2 cut(s)	189, 217
MboII	GAAGA	2 cut(s)	152, 252
MfeI	CAATTG	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	138, 432, 545, 615
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	105, 288, 573
MseI	TTAA	3 cut(s)	378, 404, 471
MslI	CAYNNNNRTG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	615
MwoI	GCNNNNNNNGC	5 cut(s)	299, 379, 521, 530, 617
NdeII	GATC	2 cut(s)	189, 217
NlaIII	CATG	4 cut(s)	126, 508, 537, 593
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	2 cut(s)	6, 392
NspI	RCATGY	2 cut(s)	126, 537
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	4 cut(s)	375, 517, 610, 613
Psp1406I	AACGTT	1 cut(s)	400
PspEI	GGTNACC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	378, 404, 471
SatI	GCNGC	4 cut(s)	374, 516, 609, 612
Sau3AI	GATC	2 cut(s)	189, 217
Sau96I	GGNCC	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	3 cut(s)	78, 193, 511
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	4 cut(s)	138, 432, 545, 615
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	4 cut(s)	146, 152, 390, 621
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	14, 322
TaiI	ACGT	2 cut(s)	300, 403
TaqI	TCGA	2 cut(s)	216, 280
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	4 cut(s)	138, 432, 545, 615
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	3 cut(s)	378, 404, 471
Tru9I	TTAA	3 cut(s)	378, 404, 471
TseFI	GTSAC	2 cut(s)	6, 392
TseI	GCWGC	4 cut(s)	373, 515, 608, 611
Tsp45I	GTSAC	2 cut(s)	6, 392
TspDTI	ATGAA	2 cut(s)	304, 521
Vha464I	CTTAAG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	2 cut(s)	126, 537
XspI	CTAG	4 cut(s)	146, 152, 390, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.