Rorug04G0211400

Cell wall vacuolar inhibitor of fructosidase 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
36781919 .. 36782131
213 bp
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UTR
Exon/CDS
Intron
Rorug04G0211400.1

Sequence Viewer

Length: 213 bp
ATGAATGGAGATCATCGAGAGGAACAAACCAAGAAGATCATCATCATGAATGTCAAGAGGGTAGCCACCGCGGACGGCTTGAAGATCAAGAAGGATGATGTTGTGCCCTCATCAACACAACCACCAGTGCTGAAAGCTCATAATACTTCATCAAAGCTGGAAGGGGAATATAGTTTAGACTTGTCTGATATCATGAGTCATGACCATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.77

Weight (kDa)

6.39

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 69, 71
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 2 cut(s) 137, 157
AluI AGCT 2 cut(s) 137, 157
BaeGI GKGCMC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 41
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 3 cut(s) 10, 36, 84
BspACI CCGC 2 cut(s) 69, 71
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 3 cut(s) 45, 192, 199
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 10, 36, 84
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 3 cut(s) 13, 39, 87
BstMBI GATC 3 cut(s) 10, 36, 84
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 132
CciI TCATGA 3 cut(s) 45, 192, 199
Cfr42I CCGCGG 1 cut(s) 72
CviAII CATG 4 cut(s) 46, 193, 200, 206
CviJI RGCY 4 cut(s) 65, 78, 137, 157
CviKI_1 RGCY 4 cut(s) 65, 78, 137, 157
DpnI GATC 3 cut(s) 12, 38, 86
DpnII GATC 3 cut(s) 10, 36, 84
Eco32I GATATC 1 cut(s) 190
EcoRV GATATC 1 cut(s) 190
FaeI CATG 4 cut(s) 49, 196, 203, 209
FaiI YATR 6 cut(s) 47, 141, 171, 194, 201, 207
FatI CATG 4 cut(s) 45, 192, 199, 205
FokI GGATG 1 cut(s) 107
Hin1II CATG 4 cut(s) 49, 196, 203, 209
HinfI GANTC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 6 cut(s) 17, 46, 55, 88, 193, 200
HpyAV CCTTC 2 cut(s) 85, 155
Hsp92II CATG 4 cut(s) 49, 196, 203, 209
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 3 cut(s) 10, 36, 84
LpnPI CCDG 2 cut(s) 138, 143
MalI GATC 3 cut(s) 12, 38, 86
MboI GATC 3 cut(s) 10, 36, 84
MboII GAAGA 2 cut(s) 46, 94
MhlI GDGCHC 1 cut(s) 108
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 3 cut(s) 13, 51, 118
MslI CAYNNNNRTG 2 cut(s) 44, 204
MspA1I CMGCKG 1 cut(s) 71
MvnI CGCG 1 cut(s) 71
NdeII GATC 3 cut(s) 10, 36, 84
NlaIII CATG 4 cut(s) 49, 196, 203, 209
PagI TCATGA 3 cut(s) 45, 192, 199
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
RseI CAYNNNNRTG 2 cut(s) 44, 204
SacII CCGCGG 1 cut(s) 72
Sau3AI GATC 3 cut(s) 10, 36, 84
SchI GAGTC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 108
SetI ASST 2 cut(s) 139, 159
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SmiMI CAYNNNNRTG 2 cut(s) 44, 204
SsiI CCGC 2 cut(s) 69, 71
TaqI TCGA 1 cut(s) 16
TscAI CASTG 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 17, 62, 138
TspRI CASTG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.