RchiOBHm_Chr4g0399701

Cell wall vacuolar inhibitor of fructosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000921
Physical Location & Seq
Forward (+)
16991191 .. 16991547
357 bp
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UTR
Exon/CDS
Intron
PRQ37181

Sequence Viewer

Length: 357 bp
ATGGTCGATGTTGTTAAGGCTAAGGCAACTGATACTGTAAACCATATCAATGATCTTCTTAAACAGACGTCGGGAGCTCAACCCTTAAGTTCTTGCCTCGATGTATATAATGTAGTTATACAGGCTAAAGTCCCAAAAGCCGGTGAAGCTCTGTCTAAAGGTGACCCTAAGTTTGCAGAGCAAGGCATGAATGATGTTGGTCTGGGGGCAGATTTATGTGAAAATAGTTTTTCGGGCAGCTCATCTCCTCTCACATATTTGAACAAAACTGTTAGGGATGTTGCGGATATGGCTTCAGCAATTGTTCAGCATTTTGATATGCATATGTCCTCTTGTTTCTCTTTTCAACTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

118

Amino Acids

12.6

Weight (kDa)

5.11

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AciI CCGC 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 140
AflII CTTAAG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 262, 347
AluBI AGCT 3 cut(s) 77, 149, 240
AluI AGCT 3 cut(s) 77, 149, 240
Alw21I GWGCWC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 237
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AsuHPI GGTGA 2 cut(s) 155, 173
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 140
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 37, 271
BstACI GRCGYC 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 21, 168
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 146, 290
BstPI GGTNACC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 140
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 20, 77, 125, 140, 149, 240, 293
CviKI_1 RGCY 7 cut(s) 20, 77, 125, 140, 149, 240, 293
DdeI CTNAG 2 cut(s) 21, 168
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 79
FaeI CATG 1 cut(s) 190
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 186
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 238
HapII CCGG 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 190
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 155, 173
Hpy166II GTNNAC 1 cut(s) 40
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 37, 271
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 176, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 290
HpyF3I CTNAG 2 cut(s) 21, 168
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 3 cut(s) 107, 154, 188
Lsp1109I GCAGC 1 cut(s) 249
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 47
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 300
MnlI CCTC 3 cut(s) 107, 258, 340
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 4 cut(s) 15, 60, 86, 355
MslI CAYNNNNRTG 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 85
MspI CCGG 1 cut(s) 141
MunI CAATTG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 146, 290
NdeI CATATG 1 cut(s) 324
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 324
PkrI GCNGC 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 48
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 4 cut(s) 15, 60, 86, 355
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 79
SetI ASST 5 cut(s) 71, 79, 151, 163, 242
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 300
SsiI CCGC 1 cut(s) 284
SstI GAGCTC 1 cut(s) 79
TaaI ACNGT 2 cut(s) 37, 271
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 6, 99
TasI AATT 1 cut(s) 300
Tru1I TTAA 4 cut(s) 15, 60, 86, 355
Tru9I TTAA 4 cut(s) 15, 60, 86, 355
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 85
ZraI GACGTC 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.