Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Forward (+)

28052597 .. 28053028

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGATGCGAAACTCATCGACCAAACGTGTAGAAAAACACCGGATTACAACCTTTGTACCTCAATTCTCAAATCTAGCCCCGGTAAAGATCTTAGAGGTTTAGCTATCGTAGCTGTTGACGCAGTTGGGTCTAAAGCAACTACAGCAATGAACAGAATTAATGAGTTGCTTAAACAAAGCCCAAAAGATACTGCCTTAAATCATTGTCATGATATGTACAATGTAATTTTAAATTCATATGTTCAAGGAGCCAGGGATACGCTTAAGCGGGGTTTCTCTTCTCATATTGCAACCTCAAGCATGAGTCTCACTCCCGATACTGCAAGGTCATGCGAGGAAGCTTTTAAAGGCAGGTCTCCTCTTACTAATTTGAACAAAGATGTCGAGAATATTGCGGCAGTGGCTGGAGCAGTGGCGGGGCAATTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

143

Amino Acids

15.32

Weight (kDa)

8.72

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	4 - 133	9.1e-19	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	342
AciI	CCGC	3 cut(s)	268, 395, 416
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	2 cut(s)	58, 218
AflII	CTTAAG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	245, 373
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	104, 113, 341
AluI	AGCT	3 cut(s)	104, 113, 341
Alw26I	GTCTC	2 cut(s)	311, 360
AlwNI	CAGNNNCTG	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	232
AseI	ATTAAT	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	40, 73
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	311, 360
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	81, 253
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	81, 253
BplI	GAGNNNNNCTC	2 cut(s)	295, 327
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	79, 252
BsaWI	WCCGGW	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	79, 252
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	41, 81
BsmAI	GTCTC	2 cut(s)	311, 360
Bso31I	GGTCTC	1 cut(s)	360
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	3 cut(s)	268, 395, 416
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	153
BsrGI	TGTACA	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	79, 252
BssMI	GATC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	283
BstAFI	CTTAAG	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	311, 360
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 119, 143, 401
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	79, 251
BstSFI	CTRYAG	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	405, 417
BtsIMutI	CAGTG	2 cut(s)	405, 417
BveI	ACCTGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	208
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	57, 217
CviAII	CATG	3 cut(s)	209, 301, 330
CviJI	RGCY	7 cut(s)	78, 104, 113, 180, 251, 341, 404
CviKI_1	RGCY	7 cut(s)	78, 104, 113, 180, 251, 341, 404
CviQI	GTAC	2 cut(s)	57, 217
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DraI	TTTAAA	2 cut(s)	231, 346
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco31I	GGTCTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	251
FaeI	CATG	3 cut(s)	212, 304, 333
FaiI	YATR	7 cut(s)	210, 215, 238, 240, 285, 302, 331
FatI	CATG	3 cut(s)	208, 300, 329
FauI	CCCGC	2 cut(s)	261, 409
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	426
HapII	CCGG	2 cut(s)	41, 81
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	212, 304, 333
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	2 cut(s)	41, 81
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	209, 314, 385
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	290, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 119, 143, 401
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	212, 304, 333
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	248, 407
LpnPI	CCDG	6 cut(s)	54, 94, 238, 265, 337, 390
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	26
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	270
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	6 cut(s)	63, 156, 225, 232, 367, 422
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	5 cut(s)	70, 89, 304, 328, 369
MseI	TTAA	6 cut(s)	159, 171, 197, 230, 264, 345
MslI	CAYNNNNRTG	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	41, 81
MspR9I	CCNGG	2 cut(s)	81, 253
MunI	CAATTG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	4 cut(s)	110, 119, 143, 401
NciI	CCSGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	212, 304, 333
NlaIV	GGNNCC	1 cut(s)	250
PagI	TCATGA	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	58, 218
RsaNI	GTAC	2 cut(s)	57, 217
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	6 cut(s)	159, 171, 197, 230, 264, 345
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	81, 253
SfcI	CTRYAG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	263, 295
SmoI	CTYRAG	2 cut(s)	263, 295
Sse9I	AATT	6 cut(s)	63, 156, 225, 232, 367, 422
SsiI	CCGC	3 cut(s)	268, 395, 416
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	79, 251
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	18, 384
TasI	AATT	6 cut(s)	63, 156, 225, 232, 367, 422
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	6 cut(s)	159, 171, 197, 230, 264, 345
Tru9I	TTAA	6 cut(s)	159, 171, 197, 230, 264, 345
TscAI	CASTG	2 cut(s)	405, 417
TspDTI	ATGAA	2 cut(s)	164, 225
TspRI	CASTG	2 cut(s)	405, 417
Vha464I	CTTAAG	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	232
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.