Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

26767710 .. 26768147

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATGCCAAGCTTATTGAACAAACATGCAACAAAACACCACATCCTATTTTGTGTGTCTATTCTCTCAAATCTGACCCTCGAAGCGCGCGGGCGGATGTTCCAGGCTTGGCTCTTATAATGGTGGACGTTGTTAGTGGGAAAGTAAAAGGTATTCTGAAAAAACTTGATACATTGCTTAAACAGAGCCCAAGCAATAAAGCCTTGCAAAATTGCAATCAAGATTACCATATAGTTTTAAACATTGAAATCAGTGCAGCCAAAGGAGCAATTACTCTGGGTGACCCTAAGTTTGCAGAACAGTACATGAACGATGCTAGCAACAGTGCTGATTCATGTGAGCGAGAATTTAAAGGTAGGTCCCCTCTAACAAAGCTGAACAAAGATATAGTTGATGTTTCAAGGGTGGCTTCAGCAATAGTGAAGATTTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0030234 GO:0030427 GO:0032501 GO:0032502 GO:0032989 GO:0035838 GO:0040007 GO:0042995 GO:0043086 GO:0044092 GO:0044463 GO:0044464 GO:0044706 GO:0046910 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050790 GO:0051286 GO:0051704 GO:0060560 GO:0065007 GO:0065009 GO:0071840 GO:0071944 GO:0090404 GO:0090406 GO:0098772 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

146

Amino Acids

15.8

Weight (kDa)

8.66

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	4 - 138	4.9e-19	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AccII	CGCG	2 cut(s)	89, 91
AciI	CCGC	2 cut(s)	91, 95
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	20, 248, 402
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	13, 376
AluI	AGCT	2 cut(s)	13, 376
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspLEI	GCGC	2 cut(s)	89, 91
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	269
BciT130I	CCWGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	3 cut(s)	10, 43, 103
BseMI	GCAATG	1 cut(s)	173
BsePI	GCGCGC	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	2 cut(s)	89, 91
BslFI	GGGAC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	191
BspACI	CCGC	2 cut(s)	91, 95
BspFNI	CGCG	2 cut(s)	89, 91
BspLI	GGNNCC	1 cut(s)	362
BspOI	GCTAGC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	173
BssHII	GCGCGC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	303, 326
BstC8I	GCNNGC	3 cut(s)	89, 93, 319
BstDEI	CTNAG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	3 cut(s)	10, 43, 103
BstFNI	CGCG	2 cut(s)	89, 91
BstHHI	GCGC	2 cut(s)	89, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	2 cut(s)	89, 91
BstV1I	GCAGC	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	10, 43, 103
BtsIMutI	CAGTG	2 cut(s)	259, 331
Cac8I	GCNNGC	3 cut(s)	89, 93, 319
CfoI	GCGC	2 cut(s)	89, 91
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	27, 307, 336
CviJI	RGCY	8 cut(s)	13, 108, 113, 189, 203, 260, 376, 410
CviKI_1	RGCY	8 cut(s)	13, 108, 113, 189, 203, 260, 376, 410
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	288
DraI	TTTAAA	2 cut(s)	240, 352
EciI	GGCGGA	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	360
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	3 cut(s)	30, 310, 339
FaiI	YATR	7 cut(s)	28, 119, 231, 233, 308, 337, 389
FalI	AAGNNNNNCTT	2 cut(s)	394, 426
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	26, 306, 335
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	3 cut(s)	17, 30, 110
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	2 cut(s)	88, 90
GluI	GCNGC	1 cut(s)	258
HhaI	GCGC	2 cut(s)	89, 91
Hin1II	CATG	3 cut(s)	30, 310, 339
Hin6I	GCGC	2 cut(s)	87, 89
HinP1I	GCGC	2 cut(s)	87, 89
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	76, 159
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	303, 326
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	5 cut(s)	30, 208, 216, 257, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	30, 310, 339
HspAI	GCGC	2 cut(s)	87, 89
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	3 cut(s)	90, 117, 263
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	281
MboII	GAAGA	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	211, 270, 347
MnlI	CCTC	2 cut(s)	90, 375
MseI	TTAA	3 cut(s)	180, 239, 351
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	2 cut(s)	89, 91
MwoI	GCNNNNNNNGC	1 cut(s)	266
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	30, 310, 339
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	30
PauI	GCGCGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	360
PspPPI	RGGWCCY	1 cut(s)	360
PteI	GCGCGC	1 cut(s)	87
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	3 cut(s)	180, 239, 351
SatI	GCNGC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	6 cut(s)	15, 132, 154, 358, 362, 378
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	1 cut(s)	360
Sse9I	AATT	3 cut(s)	211, 270, 347
SsiI	CCGC	2 cut(s)	91, 95
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	303, 326
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	82
TasI	AATT	3 cut(s)	211, 270, 347
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	3 cut(s)	180, 239, 351
Tru9I	TTAA	3 cut(s)	180, 239, 351
TscAI	CASTG	2 cut(s)	259, 331
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	323, 324
TspRI	CASTG	2 cut(s)	259, 331
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.