Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Forward (+)

50259374 .. 50259814

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATGCTAAACTCATTGACGAAACATGTCAAAAAACACCAAATCCCAATCTTTGTGTTTCATCTCTCAAATCAGACCCTCAAAGTTCCGGTGCTGATGTCAAAGACTTAGGCATAATAATGGTAGATGTGGTTAAGGCCAAAGCAATTATCGGTCAAAAAAAAGTAAAAGAATTGCTTGAGCAGAGCCGAGGAGATCTACGCTTAAAAGCTTGTTCAAGTGACTATGATAGGATATCGAATCATCATGTCCCAACTGCTTTACTGGCGTTCAATAAAGATGTCCCGGACATTGCTGAAGAAGACATGAGTGAAGCGGCTGAAGAGGCAAGGGCATGCGAGTCTAGTTTTTCAGGGGGTTCTCCTCTAACAGATGTGAATAATGTTTTAGCAGATGTTGCAGCTATTACTGCAGCTATAGCAAAGGAATTAGTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

146

Amino Acids

15.48

Weight (kDa)

4.71

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	4 - 135	4.7e-18	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	318, 342
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	219, 274
AluBI	AGCT	3 cut(s)	212, 404, 416
AluI	AGCT	3 cut(s)	212, 404, 416
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	401, 413
AsuC2I	CCSGG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	413, 425
BcnI	CCSGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	2 cut(s)	411, 417
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	318, 402, 414
BlsI	GCNGC	3 cut(s)	319, 403, 415
Bme1390I	CCNGG	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	207, 354
BseXI	GCAGC	2 cut(s)	413, 425
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	90, 287
BslFI	GGGAC	2 cut(s)	236, 269
BsmFI	GGGAC	2 cut(s)	236, 269
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	1 cut(s)	140
BspMAI	CTGCAG	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 326, 398, 410, 419
BstNSI	RCATGY	2 cut(s)	30, 339
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	2 cut(s)	411, 417
BstV1I	GCAGC	2 cut(s)	413, 425
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	337
CviAII	CATG	4 cut(s)	27, 248, 307, 336
CviJI	RGCY	6 cut(s)	140, 189, 212, 320, 404, 416
CviKI_1	RGCY	6 cut(s)	140, 189, 212, 320, 404, 416
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	318, 342
EcoRV	GATATC	1 cut(s)	237
FaeI	CATG	4 cut(s)	30, 251, 310, 339
FaiI	YATR	7 cut(s)	28, 116, 228, 249, 308, 337, 419
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	2 cut(s)	236, 269
FatI	CATG	4 cut(s)	26, 247, 306, 335
Fnu4HI	GCNGC	3 cut(s)	318, 402, 414
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	318, 402, 414
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	3 cut(s)	318, 402, 414
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	2 cut(s)	90, 287
Hin1II	CATG	4 cut(s)	30, 251, 310, 339
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	241, 341
HpaII	CCGG	2 cut(s)	90, 287
Hpy188I	TCNGA	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	401, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 326, 398, 410, 419
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	30, 251, 310, 339
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	103, 251, 300, 339
Lsp1109I	GCAGC	2 cut(s)	413, 425
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	311, 314, 335
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	3 cut(s)	147, 173, 428
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	4 cut(s)	90, 185, 319, 375
MseI	TTAA	2 cut(s)	135, 206
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	2 cut(s)	90, 287
MspR9I	CCNGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	5 cut(s)	266, 326, 398, 410, 419
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	4 cut(s)	30, 251, 310, 339
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	30, 339
PaeI	GCATGC	1 cut(s)	339
PciI	ACATGT	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	241
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	319, 403, 415
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PscI	ACATGT	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	135, 206
SatI	GCNGC	3 cut(s)	318, 402, 414
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	287
SetI	ASST	3 cut(s)	214, 406, 418
SfcI	CTRYAG	2 cut(s)	411, 417
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	3 cut(s)	147, 173, 428
SsiI	CCGC	1 cut(s)	317
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	285
TaqI	TCGA	1 cut(s)	239
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	3 cut(s)	147, 173, 428
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	135, 206
Tru9I	TTAA	2 cut(s)	135, 206
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	401, 413
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	51
XceI	RCATGY	2 cut(s)	30, 339
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.