Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

60773804 .. 60774310

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGAATTTGATGTGCTTAGCGGCAGTTCTCATATTTTTCATTCATACTGCAATTTTGCCAACCGAAGCAAATATCGTTGCCCAAACATGTCAAAAAACACCAAACCCTCCATTGTGTCTCTCGTCTCTCAAATCCGACCCTCGGAGCGCCCAAGCAGACATATATGGCTTAGCTACCATAATGGTCGATGTGGTCAAGGCAAAGTCCACGACGACTCTGAACCAAATCAACCAATTGCTTAAGCAAAGCCCGAGAGACAAAGCGTTGATAGATTGTGCTGACAGTTACAACGCAGTTTTAAAAGGTGATGTCCCAGAAGCCTATCAGGCAATCAATGTAAGAAGACGTATGTTTGCATTGGATGGCATGAATGACGCTGTGAATGAGGCTAATGGATGCGAACGCAACTTTGCAGGCAGCAGCTCTCATCCTCTGACTAAATTGAATAAAGATGTGGCAGATGTTGCTAGTGTGGCTGCAGCAGTTATTAATCAATTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

169

Amino Acids

18.05

Weight (kDa)

7.61

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	26 - 162	6.3e-20	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	144
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	448
AluBI	AGCT	2 cut(s)	176, 426
AluI	AGCT	2 cut(s)	176, 426
Alw26I	GTCTC	3 cut(s)	125, 132, 252
Ama87I	CYCGRG	1 cut(s)	253
ApeKI	GCWGC	4 cut(s)	420, 423, 479, 482
ApoI	RAATTY	1 cut(s)	7
AseI	ATTAAT	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	432, 435, 466, 494
BccI	CCATC	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	125, 132, 252
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	5 cut(s)	24, 421, 424, 480, 483
BlpI	GCTNAGC	2 cut(s)	19, 172
BlsI	GCNGC	5 cut(s)	25, 422, 425, 481, 484
BmeT110I	CYCGRG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	352
Bpu1102I	GCTNAGC	2 cut(s)	19, 172
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	3 cut(s)	370, 404, 430
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	432, 435, 466, 494
BsiHKCI	CYCGRG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	3 cut(s)	125, 132, 252
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	253
Bsp1720I	GCTNAGC	2 cut(s)	19, 172
BspACI	CCGC	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	287
BstAFI	CTTAAG	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	19, 172
BstF5I	GGATG	3 cut(s)	370, 404, 430
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstMAI	GTCTC	3 cut(s)	125, 132, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 467, 476
BstNSI	RCATGY	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	4 cut(s)	432, 435, 466, 494
BstV2I	GAAGAC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	370, 404, 430
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	152
CseI	GACGC	1 cut(s)	386
CviAII	CATG	2 cut(s)	90, 370
CviJI	RGCY	7 cut(s)	171, 176, 252, 323, 392, 426, 479
CviKI_1	RGCY	7 cut(s)	171, 176, 252, 323, 392, 426, 479
DdeI	CTNAG	2 cut(s)	19, 172
DraI	TTTAAA	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	2 cut(s)	93, 373
FaiI	YATR	9 cut(s)	35, 48, 91, 164, 166, 168, 182, 353, 371
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	89, 369
Fnu4HI	GCNGC	5 cut(s)	24, 421, 424, 480, 483
FokI	GGATG	3 cut(s)	377, 411, 417
Fsp4HI	GCNGC	5 cut(s)	24, 421, 424, 480, 483
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	24, 421, 424, 480, 483
HaeII	RGCGCY	1 cut(s)	153
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	93, 373
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	4 cut(s)	139, 147, 222, 438
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	4 cut(s)	53, 359, 416, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 467, 476
HpyF3I	CTNAG	2 cut(s)	19, 172
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	93, 373
HspAI	GCGC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	3 cut(s)	314, 330, 402
Lsp1109I	GCAGC	4 cut(s)	432, 435, 466, 494
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	287
MboII	GAAGA	2 cut(s)	16, 357
MfeI	CAATTG	1 cut(s)	236
MluCI	AATT	5 cut(s)	7, 54, 236, 443, 497
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	4 cut(s)	120, 153, 382, 444
MseI	TTAA	3 cut(s)	243, 302, 492
MspCI	CTTAAG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	329, 467, 476
NlaIII	CATG	2 cut(s)	93, 373
NspI	RCATGY	1 cut(s)	93
PciI	ACATGT	1 cut(s)	89
PkrI	GCNGC	5 cut(s)	25, 422, 425, 481, 484
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	492
PstI	CTGCAG	1 cut(s)	484
SaqAI	TTAA	3 cut(s)	243, 302, 492
SatI	GCNGC	5 cut(s)	24, 421, 424, 480, 483
SchI	GAGTC	1 cut(s)	211
SetI	ASST	4 cut(s)	178, 310, 352, 428
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	5 cut(s)	7, 54, 236, 443, 497
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	189
TasI	AATT	5 cut(s)	7, 54, 236, 443, 497
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	243, 302, 492
Tru9I	TTAA	3 cut(s)	243, 302, 492
TseI	GCWGC	4 cut(s)	420, 423, 479, 482
TspDTI	ATGAA	4 cut(s)	17, 31, 35, 386
Vha464I	CTTAAG	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.