Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

33766636 .. 33767076

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1249600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATGCCAATCTGATCGCACAAACATGCAACCAAACACCATGTCCGGATCTTTGCGTCTCTACCCTTCAATCAGACCCTCGAAGCACCAAAGCAGATGTCAAAGGCTTAGGAATCATAATGATTGATGCAGTTAGGGCTAAGGCACGAGACGCTAATCGCCAACTCGAGGAGCTGATCAATAGAGATGTGGGAAATGTACCCGCAGGAAAATGCAGATTTAACTACTCCGATATTTTCCAACTTGATATTCCTCAAGCCATTGAAGCTTTCCCTAAAGATGATTATAAATCAGCAGAGCTAGCCATGACTAATGTCGTCGCAAACGCAGATTCATGCGAAAGAGGTTTTTCCGGCGGCAGTCCTTTCAAAGACGAAAGCCAAGCTCTCCATGATGTTGCTTATGTGGTTGCAGCAATTGCCAAAGTATTGCGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

147

Amino Acids

15.81

Weight (kDa)

4.94

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	4 - 123	1.4e-18	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	2 cut(s)	204, 357
AclWI	GGATC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	71, 266, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	4 cut(s)	175, 269, 301, 386
AluI	AGCT	4 cut(s)	175, 269, 301, 386
Alw26I	GTCTC	2 cut(s)	64, 144
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	413
ArsI	GACNNNNNNTTYG	4 cut(s)	28, 60, 84, 116
AspLEI	GCGC	1 cut(s)	435
AsuNHI	GCTAGC	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	167
BauI	CACGAG	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	425
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	64, 144
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	2 cut(s)	358, 414
BlsI	GCNGC	2 cut(s)	359, 415
BmeT110I	CYCGRG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	118
BmtI	GCTAGC	1 cut(s)	305
BoxI	GACNNNNGTC	1 cut(s)	314
Bpu10I	CCTNAGC	2 cut(s)	109, 141
BpuEI	CTTGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	9
BseAI	TCCGGA	1 cut(s)	46
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	47, 354
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	64, 144
BsmBI	CGTCTC	2 cut(s)	64, 144
BsoBI	CYCGRG	1 cut(s)	167
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	15, 49, 177
BspACI	CCGC	2 cut(s)	204, 357
BspEI	TCCGGA	1 cut(s)	46
BspOI	GCTAGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	57
BssMI	GATC	3 cut(s)	15, 49, 177
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	109, 141
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	3 cut(s)	18, 52, 180
BstMAI	GTCTC	2 cut(s)	64, 144
BstMBI	GATC	3 cut(s)	15, 49, 177
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 152, 266, 302, 419
BstNSI	RCATGY	1 cut(s)	30
BstPAI	GACNNNNGTC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	435
CseI	GACGC	2 cut(s)	46, 161
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	5 cut(s)	27, 42, 307, 336, 392
CviJI	RGCY	9 cut(s)	108, 140, 175, 260, 269, 301, 305, 381, 386
CviKI_1	RGCY	9 cut(s)	108, 140, 175, 260, 269, 301, 305, 381, 386
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	2 cut(s)	109, 141
DpnI	GATC	3 cut(s)	17, 51, 179
DpnII	GATC	3 cut(s)	15, 49, 177
Eco88I	CYCGRG	1 cut(s)	167
Esp3I	CGTCTC	2 cut(s)	64, 144
FaeI	CATG	5 cut(s)	30, 45, 310, 339, 395
FaiI	YATR	8 cut(s)	28, 43, 119, 288, 308, 337, 393, 405
FatI	CATG	5 cut(s)	26, 41, 306, 335, 391
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	358, 414
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	358, 414
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	2 cut(s)	358, 414
HapII	CCGG	2 cut(s)	47, 354
HgaI	GACGC	2 cut(s)	46, 161
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	5 cut(s)	30, 45, 310, 339, 395
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	2 cut(s)	114, 332
HpaII	CCGG	2 cut(s)	47, 354
Hpy188I	TCNGA	3 cut(s)	15, 76, 232
Hpy188III	TCNNGA	2 cut(s)	47, 438
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	4 cut(s)	30, 131, 216, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 152, 266, 302, 419
HpyF3I	CTNAG	2 cut(s)	109, 141
Hsp92II	CATG	5 cut(s)	30, 45, 310, 339, 395
HspAI	GCGC	1 cut(s)	433
Kpn2I	TCCGGA	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	15, 49, 177
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	60, 192, 367
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	302
MalI	GATC	3 cut(s)	17, 51, 179
MboI	GATC	3 cut(s)	15, 49, 177
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	90, 163, 264, 338
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	25
MspI	CCGG	2 cut(s)	47, 354
MunI	CAATTG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	137, 152, 266, 302, 419
NdeII	GATC	3 cut(s)	15, 49, 177
NheI	GCTAGC	1 cut(s)	301
NlaIII	CATG	5 cut(s)	30, 45, 310, 339, 395
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	114, 332
PkrI	GCNGC	2 cut(s)	359, 415
PshAI	GACNNNNGTC	1 cut(s)	314
PsiI	TTATAA	1 cut(s)	288
PspXI	VCTCGAGB	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	358, 414
Sau3AI	GATC	3 cut(s)	15, 49, 177
SetI	ASST	5 cut(s)	177, 271, 303, 349, 388
SfaNI	GCATC	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	2 cut(s)	167, 255
SmoI	CTYRAG	2 cut(s)	167, 255
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	2 cut(s)	204, 357
SspMI	CTAG	1 cut(s)	302
TaqI	TCGA	2 cut(s)	82, 168
TasI	AATT	1 cut(s)	417
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	114, 332
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	324
XceI	RCATGY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.