Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Forward (+)

16038192 .. 16038906

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G146800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGAATTCAATATCTCCAAAACTCATGCTATCTCTCCTAGAAATTGCTTTCTGTCTAATTGTATTTCTTCCTATAAGCCATTGCAAGGTTTCTTATTTTCCAATGGGTGCCAATCTCATCGACCTAACCTGCAAAAAAACACCATACTACGATCTTTGTGTCATCTCTCTAAACTCAGATCCCCGAAGCTACACCGCAGATGTGGCCGGCTTAGGCGTCGTAATGGCGGATGTTGTTAAGGCTAAGGCAACGGATAGCCTGAACAAAATCAATGAGCTACTTACCCAGAGCCCAGGAGACCGATCGTTGACCACCTGCGTTGACTATTACAAGACAGTTATAGAAGCTGATGTTCCCCTAGCTAATGAAGCCTTTGCTTCAGGTAACGCTAAGCTTGCTGACCAAGGCATGAGTGACGCTGGCATCGTGATTGACTTATGTGAAAGCCAATTTTCTGAAGGGAGCTCTCCTCTGACAGATAAGAACAAAGCTGCTCATGATGTTGCGGCTGTGGGTGCAGGAATTGCGAGGACAATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

182

Amino Acids

19.26

Weight (kDa)

4.93

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	2 cut(s)	140, 326
AccB1I	GGYRCC	1 cut(s)	110
AciI	CCGC	3 cut(s)	198, 230, 509
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	366, 480
AcyI	GRCGYC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	7 cut(s)	192, 280, 350, 365, 397, 468, 494
AluI	AGCT	7 cut(s)	192, 280, 350, 365, 397, 468, 494
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	296, 470
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	41, 362
BfuAI	ACCTGC	2 cut(s)	140, 326
BisI	GCNGC	2 cut(s)	495, 510
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	2 cut(s)	496, 511
Bme1390I	CCNGG	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	457, 489
Bpu10I	CCTNAGC	2 cut(s)	214, 246
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	295, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	295, 406
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	296, 470
Bsp143I	GATC	3 cut(s)	154, 181, 305
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	3 cut(s)	198, 230, 509
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	112
BspMI	ACCTGC	2 cut(s)	140, 326
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	295, 406
BssMI	GATC	3 cut(s)	154, 181, 305
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	340
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	211, 399, 424
BstDEI	CTNAG	4 cut(s)	178, 214, 246, 393
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	3 cut(s)	157, 184, 308
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	154, 181, 305
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 371, 398, 518, 527
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	238
BveI	ACCTGC	2 cut(s)	140, 326
Cac8I	GCNNGC	3 cut(s)	211, 399, 424
CciI	TCATGA	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	209
CseI	GACGC	2 cut(s)	208, 428
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	3 cut(s)	28, 412, 500
DdeI	CTNAG	4 cut(s)	178, 214, 246, 393
DpnI	GATC	3 cut(s)	156, 183, 307
DpnII	GATC	3 cut(s)	154, 181, 305
EaeI	YGGCCR	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	296, 470
Eco31I	GGTCTC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	366, 480
EcoICRI	GAGCTC	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	296, 470
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	3 cut(s)	31, 415, 503
FaiI	YATR	7 cut(s)	29, 77, 148, 344, 413, 442, 501
FatI	CATG	3 cut(s)	27, 411, 499
Fnu4HI	GCNGC	2 cut(s)	495, 510
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	2 cut(s)	296, 470
Fsp4HI	GCNGC	2 cut(s)	495, 510
FspBI	CTAG	2 cut(s)	41, 362
GluI	GCNGC	2 cut(s)	495, 510
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	2 cut(s)	208, 428
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	31, 415, 503
HincII	GTYRAC	2 cut(s)	312, 325
HindII	GTYRAC	2 cut(s)	312, 325
HindIII	AAGCTT	1 cut(s)	395
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	312, 325
Hpy188I	TCNGA	3 cut(s)	181, 460, 477
Hpy188III	TCNNGA	2 cut(s)	430, 500
Hpy8I	GTNNAC	2 cut(s)	312, 325
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	87, 135, 521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 371, 398, 518, 527
HpyF3I	CTNAG	4 cut(s)	178, 214, 246, 393
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	31, 415, 503
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	154, 181, 305
LmnI	GCTCC	1 cut(s)	465
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	2 cut(s)	41, 362
MaeIII	GTNAC	2 cut(s)	386, 416
MalI	GATC	3 cut(s)	156, 183, 307
MboI	GATC	3 cut(s)	154, 181, 305
MboII	GAAGA	2 cut(s)	16, 62
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	296, 470
MluCI	AATT	5 cut(s)	7, 45, 60, 452, 525
MnlI	CCTC	2 cut(s)	483, 525
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	5 cut(s)	206, 371, 398, 518, 527
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	3 cut(s)	154, 181, 305
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	31, 415, 503
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	416
PagI	TCATGA	1 cut(s)	499
PaqCI	CACCTGC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdiI	GCCGGC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	496, 511
Ple19I	CGATCG	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	470
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	495, 510
Sau3AI	GATC	3 cut(s)	154, 181, 305
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	2 cut(s)	296, 470
SfaNI	GCATC	1 cut(s)	435
Sse9I	AATT	5 cut(s)	7, 45, 60, 452, 525
SsiI	CCGC	3 cut(s)	198, 230, 509
SspMI	CTAG	2 cut(s)	41, 362
SstI	GAGCTC	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	5 cut(s)	7, 45, 60, 452, 525
TauI	GCSGC	1 cut(s)	512
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	17, 384
TspGWI	ACGGA	1 cut(s)	269
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	2 cut(s)	41, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.