Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000590.1

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Forward (+)

37229 .. 37669

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000590.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggatgctaaactcattgatgaaacatgtcaaaaaaccccaaaccccaatctttgtgtctcatctctcacatcagaccctcgaagttccgatgctaatgtcaaaggcttgggcgtaataatggtggatgtggttaaggcaaaagcgattatgggtcaaaataaagcacaagaattgcttaagcagagcccaggagatctacgcttaaaagtttgttcaggtgactatgataagatatcaaatcatcatgtcccaaatgctttactggcatttaagaatgatgccccggacattgctgaagaagaaatgagtgaagctgctgaagaggcaagggcatgtgagtctagtttttcagggggttctcctctgacagatgtgaataatgttttagcagatgttgcggctattactgcagctatagcaaaggaattagttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

146

Amino Acids

15.35

Weight (kDa)

4.68

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	401
AcuI	CTGAAG	2 cut(s)	318, 342
AflII	CTTAAG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	2 cut(s)	317, 416
AluI	AGCT	2 cut(s)	317, 416
Alw26I	GTCTC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	317, 413
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	304, 425
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	2 cut(s)	411, 417
BfrI	CTTAAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	3 cut(s)	318, 402, 414
BlsI	GCNGC	3 cut(s)	319, 403, 415
Bme1390I	CCNGG	2 cut(s)	192, 287
BmrFI	CCNGG	2 cut(s)	192, 287
BmsI	GCATC	2 cut(s)	82, 271
BpuMI	CCSGG	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	190, 285
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	190, 285
BseGI	GGATG	2 cut(s)	10, 133
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	304, 425
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	401
BspMAI	CTGCAG	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	190, 285
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	318
BstAFI	CTTAAG	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	10, 133
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 326, 398, 410, 419
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	2 cut(s)	30, 339
BstSCI	CCNGG	2 cut(s)	190, 285
BstSFI	CTRYAG	2 cut(s)	411, 417
BstV1I	GCAGC	2 cut(s)	304, 425
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	10, 133
CviAII	CATG	3 cut(s)	27, 248, 336
CviJI	RGCY	5 cut(s)	108, 189, 317, 404, 416
CviKI_1	RGCY	5 cut(s)	108, 189, 317, 404, 416
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	318, 342
EcoRII	CCWGG	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	3 cut(s)	30, 251, 339
FaiI	YATR	6 cut(s)	28, 152, 228, 249, 337, 419
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	26, 247, 335
Fnu4HI	GCNGC	3 cut(s)	318, 402, 414
FokI	GGATG	2 cut(s)	17, 140
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	318, 402, 414
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	3 cut(s)	318, 402, 414
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	3 cut(s)	30, 251, 339
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	3 cut(s)	76, 91, 369
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 326, 398, 410, 419
Hsp92II	CATG	3 cut(s)	30, 251, 339
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	6 cut(s)	177, 204, 204, 251, 300, 339
Lsp1109I	GCAGC	2 cut(s)	304, 425
LweI	GCATC	2 cut(s)	82, 271
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	311, 314, 335
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	2 cut(s)	173, 428
MlyI	GAGTC	1 cut(s)	350
MnlI	CCTC	3 cut(s)	90, 319, 375
MseI	TTAA	4 cut(s)	135, 180, 206, 273
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	192, 287
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	5 cut(s)	266, 326, 398, 410, 419
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	30, 251, 339
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	30, 339
PciI	ACATGT	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	319, 403, 415
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PscI	ACATGT	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	135, 180, 206, 273
SatI	GCNGC	3 cut(s)	318, 402, 414
Sau3AI	GATC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	192, 287
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	3 cut(s)	223, 319, 418
SfaNI	GCATC	2 cut(s)	82, 271
SfcI	CTRYAG	2 cut(s)	411, 417
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	173, 428
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	190, 285
TaqI	TCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	173, 428
TauI	GCSGC	1 cut(s)	404
Tru1I	TTAA	4 cut(s)	135, 180, 206, 273
Tru9I	TTAA	4 cut(s)	135, 180, 206, 273
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	317, 413
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	179
XceI	RCATGY	2 cut(s)	30, 339
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.