Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Reverse (-)

11777699 .. 11778184

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1150300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGAACTCAACGTGTCTCATTCAACTAGTTTGTCTAGTTCTAGTAGTCTTTCTTCCCCTAAGCCATTGCAGCAGGGATGTGATCTTCCCAATGGATGCCAATATCATTGACCAAATCTGCAAAAAAACACCAGACTACAATCTCTGCGTCTCTTCTCTCAACTCAGACCCTCGAAGCGCGATAGCAGACGTTGCAGTCTTAGGGCTCGTAATGGTTGACATAGCCAAGACTAAAGCAACTGACGTTGCGAAGAAAATTAACGAGCTGCTTAAGCAGAGCCCTAGTGACCCCTGCACTCACTTTTACAAAACAATTCTGGAAGCTGATATCCCAGAAGCCGCTAAGGCTTTTATAGGTAACCCCAAGTTTGCAGAACAAGGCATGAACAACGCTGCCGGCGAGGCCCAAACATGTGAGGATGGTTTCTCTGGCAAATCTCCTCTGATTAATGAAAACAAAGCTGCCATGATGTTTGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

162

Amino Acids

17.44

Weight (kDa)

5.65

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	36 - 150	3.3e-18	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AccII	CGCG	1 cut(s)	182
AciI	CCGC	1 cut(s)	342
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	2 cut(s)	14, 413
AgsI	TTSAA	1 cut(s)	26
AhlI	ACTAGT	1 cut(s)	28
AluBI	AGCT	3 cut(s)	268, 326, 464
AluI	AGCT	3 cut(s)	268, 326, 464
Alw26I	GTCTC	2 cut(s)	23, 157
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	4 cut(s)	72, 268, 395, 464
AseI	ATTAAT	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	406
BanII	GRGCYC	2 cut(s)	210, 284
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbvI	GCAGC	4 cut(s)	84, 255, 382, 451
BccI	CCATC	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	23, 157
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	4 cut(s)	29, 38, 44, 285
BfrI	CTTAAG	1 cut(s)	272
BglI	GCCNNNNNGGC	2 cut(s)	347, 404
BisI	GCNGC	5 cut(s)	73, 269, 342, 396, 465
BlsI	GCNGC	5 cut(s)	74, 270, 343, 397, 466
BmgT120I	GGNCC	1 cut(s)	406
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	2 cut(s)	62, 345
Bse118I	RCCGGY	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	67
BseGI	GGATG	3 cut(s)	85, 103, 427
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	432
BseXI	GCAGC	4 cut(s)	84, 255, 382, 451
BsgI	GTGCAG	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	23, 157
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	210, 284
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	398
BssMI	GATC	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	4 cut(s)	62, 166, 202, 345
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	85, 103, 427
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	2 cut(s)	23, 157
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 194, 274, 347, 404
BstNSI	RCATGY	1 cut(s)	417
BstPI	GGTNACC	1 cut(s)	359
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	4 cut(s)	84, 255, 382, 451
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	85, 103, 427
Cac8I	GCNNGC	1 cut(s)	400
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	1 cut(s)	139
CviAII	CATG	3 cut(s)	385, 414, 469
DdeI	CTNAG	4 cut(s)	62, 166, 202, 345
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco24I	GRGCYC	2 cut(s)	210, 284
Eco32I	GATATC	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	210, 284
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	3 cut(s)	388, 417, 472
FaiI	YATR	5 cut(s)	224, 356, 386, 415, 470
FatI	CATG	3 cut(s)	384, 413, 468
Fnu4HI	GCNGC	5 cut(s)	73, 269, 342, 396, 465
FokI	GGATG	3 cut(s)	92, 110, 434
FriOI	GRGCYC	2 cut(s)	210, 284
Fsp4HI	GCNGC	5 cut(s)	73, 269, 342, 396, 465
FspBI	CTAG	4 cut(s)	29, 38, 44, 285
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	5 cut(s)	73, 269, 342, 396, 465
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	388, 417, 472
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	169, 447
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4IV	ACGT	3 cut(s)	14, 192, 246
HpyCH4V	TGCA	5 cut(s)	72, 123, 197, 297, 374
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 194, 274, 347, 404
HpyF3I	CTNAG	4 cut(s)	62, 166, 202, 345
HpySE526I	ACGT	3 cut(s)	14, 192, 246
Hsp92II	CATG	3 cut(s)	388, 417, 472
HspAI	GCGC	1 cut(s)	180
KroI	GCCGGC	1 cut(s)	398
KroNI	GCCGGC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	84
LpnPI	CCDG	7 cut(s)	61, 147, 305, 307, 348, 412, 417
Lsp1109I	GCAGC	4 cut(s)	84, 255, 382, 451
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	4 cut(s)	29, 38, 44, 285
MaeII	ACGT	3 cut(s)	14, 192, 246
MaeIII	GTNAC	2 cut(s)	287, 359
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	5 cut(s)	16, 47, 79, 147, 265
MhlI	GDGCHC	2 cut(s)	210, 284
MluCI	AATT	2 cut(s)	258, 315
MnlI	CCTC	4 cut(s)	183, 397, 412, 453
MroNI	GCCGGC	1 cut(s)	398
MseI	TTAA	3 cut(s)	261, 273, 450
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	72, 194, 274, 347, 404
NaeI	GCCGGC	1 cut(s)	400
NdeII	GATC	1 cut(s)	84
NgoMIV	GCCGGC	1 cut(s)	398
NlaIII	CATG	3 cut(s)	388, 417, 472
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	417
PciI	ACATGT	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PdiI	GCCGGC	1 cut(s)	400
PkrI	GCNGC	5 cut(s)	74, 270, 343, 397, 466
PscI	ACATGT	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	450
PspEI	GGTNACC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	261, 273, 450
SatI	GCNGC	5 cut(s)	73, 269, 342, 396, 465
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	406
SduI	GDGCHC	2 cut(s)	210, 284
SetI	ASST	7 cut(s)	17, 195, 249, 270, 328, 361, 466
SfaNI	GCATC	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	28
Sse9I	AATT	2 cut(s)	258, 315
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	4 cut(s)	29, 38, 44, 285
TaiI	ACGT	3 cut(s)	17, 195, 249
TaqI	TCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	258, 315
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	261, 273, 450
Tru9I	TTAA	3 cut(s)	261, 273, 450
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	72, 268, 395, 464
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	3 cut(s)	17, 401, 468
Vha464I	CTTAAG	1 cut(s)	272
VspI	ATTAAT	1 cut(s)	450
XceI	RCATGY	1 cut(s)	417
XspI	CTAG	4 cut(s)	29, 38, 44, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.