Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000921

Physical Location & Seq

Genomic Coordinates Forward (+)

11751695 .. 11752231

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1149700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGAAATCTTTGATATCTCTAACCCTGATCTTCGTCGTTCAAATTATCCTTCTTCCAATAATCCATTGCAGGATCATCTTCCCAATGGATGCTGCCCTCGTTGACCAAACATGCAAGCAAACACCAAACTTCGATCTCTGCGAGACTCTTCTGCGATCCGACCCTCGGAGTCTCAACGCCGAAGATGCCAAAGGGCTAGCCTCCATTATGGTCGACATAGTTCAGGCCAAGGCAACCAAAAGCATGGACAAAATCAACGATCTGCTTAATAAGAGCCCCGTAAAAAACCAGGCCTTGTTCACCTCTTGCATTGACAATTACAACACTATCATAGATGATGATATTCCTCAAGCCTCCGAAGCTTTCAGTAATGATGATAATATTACTGCAGAAGACCGGTTGAAGGACATTACGTTTGAGGTTGACTTGTGTGACAAGCAATTTTCAGGGCTCTCTAACCCTCTCAAAGATGTCAATAAAGATGTTCATGATGCTGCAAGTATAGCTGCAGCAATCGCAGATAAGTTGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

179

Amino Acids

19.61

Weight (kDa)

4.59

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	34 - 173	1.5e-17	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47960 AT1G47960 AT3G17140
fragaria_vesca	FvH4_1g05890 FvH4_4g14140 FvH4_4g20440 FvH4_5g04330 FvH4_6g33790
malus_domestica	MD03G1248700.v1.1 MD03G1249600.v1.1 MD03G1249700.v1.1 MD03G1250000.v1.1 MD13G1149700.v1.1 MD13G1150200.v1.1 MD13G1150300.v1.1 MD13G1150400.v1.1 MD16G1150000.v1.1 MD16G1150100.v1.1 MD16G1150600.v1.1
prunus_persica	Prupe.1G114500_v2.0.a1 Prupe.3G146800_v2.0.a1 Prupe.5G112600_v2.0.a1
pyrus_communis	pycom16g12860
rosa_chinensis	RchiOBHm_Chr2g0143761 RchiOBHm_Chr2g0144321 RchiOBHm_Chr3g0482891 RchiOBHm_Chr4g0399701 RchiOBHm_Chr4g0426481 RchiOBHm_Chr7g0200071
rosa_laevigata	RLG00000020073
rosa_multiflora	Rmu_sc0000590.1_g000011 Rmu_sc0003475.1_g000029 Rmu_ssc0000118.1_g000013 Rmu_ssc0000175.1_g000025
rosa_roxburghii	Rroxscaffold_2G00101760 Rroxscaffold_5G00344640 Rroxscaffold_5G00368490 Rroxscaffold_6G00398850 Rroxscaffold_6G00399210
rosa_rugosa	Rorug02G0382900 Rorug02G0386000 Rorug03G0196600 Rorug04G0018400 Rorug04G0211400 Rorug04G0212000
rosa_samantha	Rh2AG435200 Rh2AG438200 Rh2BG448600 Rh2CG425000 Rh2DG458200 Rh3BG287200 Rh3CG280900 Rh3CG284500 Rh3DG276900 Rh3DG277000 Rh3DG280000 Rh4BG274400 Rh4CG104700 Rh4CG288400 Rh4DG088700 Rh7DG186900
rosa_wichuraiana	Rw3G022400 Rw3G022410 Rw4G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AclWI	GGATC	2 cut(s)	83, 153
AfiI	CCNNNNNNNGG	2 cut(s)	168, 406
AgeI	ACCGGT	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	44, 406
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	2 cut(s)	365, 509
AluI	AGCT	2 cut(s)	365, 509
Alw26I	GTCTC	2 cut(s)	140, 179
AlwI	GGATC	2 cut(s)	83, 153
AoxI	GGCC	2 cut(s)	228, 294
ApeKI	GCWGC	4 cut(s)	95, 497, 509, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AsiGI	ACCGGT	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	295
AsuNHI	GCTAGC	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	281, 456
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	82, 484, 496, 524
BceAI	ACGGC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	140, 179
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	390, 510
BisI	GCNGC	4 cut(s)	96, 498, 510, 513
BlsI	GCNGC	4 cut(s)	97, 499, 511, 514
Bme1390I	CCNGG	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	3 cut(s)	82, 178, 484
BmtI	GCTAGC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	167, 231
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 406
Bse118I	RCCGGY	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	167, 231
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	168, 406
BseMI	GCAATG	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	82, 484, 496, 524
BshFI	GGCC	2 cut(s)	230, 296
BshTI	ACCGGT	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	168, 406
BsmAI	GTCTC	2 cut(s)	140, 179
BsnI	GGCC	2 cut(s)	230, 296
Bsp1286I	GDGCHC	2 cut(s)	281, 456
Bsp143I	GATC	5 cut(s)	30, 75, 136, 158, 262
BspANI	GGCC	2 cut(s)	230, 296
BspHI	TCATGA	1 cut(s)	490
BspMAI	CTGCAG	2 cut(s)	394, 514
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	83, 153
BsrDI	GCAATG	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	167, 231
BssMI	GATC	5 cut(s)	30, 75, 136, 158, 262
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	119, 201
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	5 cut(s)	33, 78, 139, 161, 265
BstMAI	GTCTC	2 cut(s)	140, 179
BstMBI	GATC	5 cut(s)	30, 75, 136, 158, 262
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 362, 506, 518
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	390, 510
BstV1I	GCAGC	4 cut(s)	82, 484, 496, 524
BstV2I	GAAGAC	1 cut(s)	402
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	230, 296
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	119, 201
CciI	TCATGA	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	399
CspAI	ACCGGT	1 cut(s)	399
CviAII	CATG	3 cut(s)	114, 247, 491
CviJI	RGCY	9 cut(s)	199, 203, 230, 279, 296, 356, 365, 454, 509
CviKI_1	RGCY	9 cut(s)	199, 203, 230, 279, 296, 356, 365, 454, 509
DpnI	GATC	5 cut(s)	32, 77, 138, 160, 264
DpnII	GATC	5 cut(s)	30, 75, 136, 158, 262
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	2 cut(s)	281, 456
Eco32I	GATATC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	291
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	281, 456
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	117, 250, 494
FaiI	YATR	7 cut(s)	115, 212, 221, 248, 335, 492, 506
FatI	CATG	3 cut(s)	113, 246, 490
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	96, 498, 510, 513
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	2 cut(s)	281, 456
Fsp4HI	GCNGC	4 cut(s)	96, 498, 510, 513
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	4 cut(s)	96, 498, 510, 513
HaeIII	GGCC	2 cut(s)	230, 296
HapII	CCGG	1 cut(s)	400
Hin1II	CATG	3 cut(s)	117, 250, 494
HincII	GTYRAC	3 cut(s)	106, 217, 427
HindII	GTYRAC	3 cut(s)	106, 217, 427
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	148, 172
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	4 cut(s)	106, 217, 303, 427
Hpy188I	TCNGA	3 cut(s)	163, 171, 361
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	4 cut(s)	106, 217, 303, 427
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	62, 400
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	6 cut(s)	72, 117, 312, 392, 500, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 362, 506, 518
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	117, 250, 494
Kzo9I	GATC	5 cut(s)	30, 75, 136, 158, 262
LpnPI	CCDG	7 cut(s)	41, 58, 212, 278, 305, 413, 435
Lsp1109I	GCAGC	4 cut(s)	82, 484, 496, 524
LweI	GCATC	3 cut(s)	82, 178, 484
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	5 cut(s)	32, 77, 138, 160, 264
MboI	GATC	5 cut(s)	30, 75, 136, 158, 262
MboII	GAAGA	7 cut(s)	16, 25, 47, 73, 143, 197, 407
MhlI	GDGCHC	2 cut(s)	281, 456
MluCI	AATT	3 cut(s)	45, 319, 443
MlyI	GAGTC	2 cut(s)	142, 181
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	8 cut(s)	110, 177, 214, 316, 360, 367, 415, 474
MseI	TTAA	1 cut(s)	270
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	188, 362, 506, 518
NdeII	GATC	5 cut(s)	30, 75, 136, 158, 262
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	117, 250, 494
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	117
PagI	TCATGA	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PinAI	ACCGGT	1 cut(s)	399
PkrI	GCNGC	4 cut(s)	97, 499, 511, 514
PleI	GAGTC	2 cut(s)	142, 180
PpsI	GAGTC	2 cut(s)	142, 180
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PstI	CTGCAG	2 cut(s)	394, 514
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	96, 498, 510, 513
Sau3AI	GATC	5 cut(s)	30, 75, 136, 158, 262
SchI	GAGTC	2 cut(s)	142, 181
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	281, 456
SetI	ASST	5 cut(s)	308, 367, 419, 426, 511
SfaNI	GCATC	3 cut(s)	82, 178, 484
SfcI	CTRYAG	2 cut(s)	390, 510
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	45, 319, 443
SseBI	AGGCCT	1 cut(s)	296
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	2 cut(s)	135, 216
TasI	AATT	3 cut(s)	45, 319, 443
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	4 cut(s)	95, 497, 509, 512
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	17, 479
XceI	RCATGY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.