Rorug04G0018400

Cell wall vacuolar inhibitor of fructosidase 1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
2689793 .. 2691597
1805 bp
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UTR
Exon/CDS
Intron
Rorug04G0018400.1

Sequence Viewer

Length: 192 bp
ATGGCCGAGTTAAACCTGGGTATACTTATAGATGTTGTGGATGAAGAATGGATGAAGGACACTCTTCCAGATGACGATCTTCCCCTGCCGCCAATGCTGGTTATAAGGACTGATGACACCGAGGATTCAAATCAGGAGACCCGAAAAGTTGAGGGAGATAGTTGGCATGATCTTGCATTAGGTTCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.14

Weight (kDa)

4.05

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 129
AjnI CCWGG 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 1 cut(s) 3
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 131
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BsaBI GATNNNNATC 2 cut(s) 75, 129
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 16, 120
Bse8I GATNNNNATC 2 cut(s) 75, 129
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 16, 120
BseGI GGATG 2 cut(s) 46, 57
BseJI GATNNNNATC 2 cut(s) 75, 129
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 76, 169
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 16, 120
BssMI GATC 2 cut(s) 76, 169
BssNAI GTATAC 1 cut(s) 23
Bst1107I GTATAC 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 69
BstF5I GGATG 2 cut(s) 46, 57
BstKTI GATC 2 cut(s) 79, 172
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 76, 169
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 46, 57
CviAII CATG 1 cut(s) 167
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 2 cut(s) 78, 171
DpnII GATC 2 cut(s) 76, 169
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 170
FaiI YATR 4 cut(s) 23, 29, 104, 168
FatI CATG 1 cut(s) 166
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 2 cut(s) 53, 64
Fsp4HI GCNGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 170
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 68, 134
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 2 cut(s) 76, 169
LpnPI CCDG 6 cut(s) 2, 29, 81, 83, 98, 119
MalI GATC 2 cut(s) 78, 171
MboI GATC 2 cut(s) 76, 169
MboII GAAGA 3 cut(s) 56, 56, 71
MnlI CCTC 2 cut(s) 115, 145
MseI TTAA 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 2 cut(s) 76, 169
NlaIII CATG 1 cut(s) 170
NmeAIII GCCGAG 1 cut(s) 31
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 90
PsiI TTATAA 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 76, 169
ScrFI CCNGG 1 cut(s) 17
SetI ASST 2 cut(s) 18, 184
SsiI CCGC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 15
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 57, 68
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.