Rh2AG435200

Cell wall vacuolar inhibitor of fructosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000921
Physical Location & Seq
Forward (+)
64612180 .. 64612695
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG435200.1

Sequence Viewer

Length: 516 bp
ATGCTCACCCATATTCGGAAGGACGCCTGCGTACTCATATTTTTCATTCAAAGTTTCAAACTGCAATTTTGCCAACCGAAGCCAATATCATTGCCCAAATATGTCAAAAAACACCAAACCCTCCGGTGTGTCTCTCGTCTCTCAAATCCGACCCTCGGAGAGCCCAAGAAGACAGATGGCTTGGCTACCATAATGGTCGATGTGGTTAAGGCAAAGTCCACAACGACTGTTAACGAAATCAACCAATTGCTTAAGCAAAGCCCAAGAGACAAAGCCTTGACAGATTGTGCTGACAGTTACAACGCAGTTTTAAAAGGTGATGTCCCAGAAGCCTATCAGGCAATTAAGGCAGGAAGAGCTACGTTTGCATTGCAAAGCATGAAAGACGCTGTGATTGAGGCTAATGAATGCAAACGCTACTTTGCAGGCAGCAAGTCTCATCCTCTGACAAAATTGAATAAAGATGTGGCAGATGTTGCTAGTGTGGCTGCAGCAATTATTGATGCATTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

171

Amino Acids

18.78

Weight (kDa)

9.38

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 43 - 166 1.2e-11 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 15, 155
AflII CTTAAG 1 cut(s) 251
AgsI TTSAA 3 cut(s) 50, 58, 457
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 4 cut(s) 136, 143, 261, 441
ApeKI GCWGC 3 cut(s) 429, 488, 491
AsuHPI GGTGA 1 cut(s) 329
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 441, 475, 503
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 4 cut(s) 136, 143, 261, 441
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 489
BfrI CTTAAG 1 cut(s) 251
BglI GCCNNNNNGGC 1 cut(s) 338
BisI GCNGC 3 cut(s) 430, 489, 492
BlsI GCNGC 3 cut(s) 431, 490, 493
BmsI GCATC 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 155
Bse3DI GCAATG 2 cut(s) 89, 368
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 15, 155
BseMI GCAATG 2 cut(s) 89, 368
BseXI GCAGC 3 cut(s) 441, 475, 503
BsiSI CCGG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 15, 155
BsmAI GTCTC 4 cut(s) 136, 143, 261, 441
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 493
BspQI GCTCTTC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 89, 368
BssECI CCNNGG 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 229, 296
Bst6I CTCTTC 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 28, 427
BstF5I GGATG 1 cut(s) 439
BstMAI GTCTC 4 cut(s) 136, 143, 261, 441
BstMWI GCNNNNNNNGC 6 cut(s) 338, 347, 356, 365, 476, 485
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 3 cut(s) 441, 475, 503
BstV2I GAAGAC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 28, 427
CseI GACGC 2 cut(s) 32, 395
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 379
CviQI GTAC 1 cut(s) 32
DraI TTTAAA 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 1 cut(s) 382
FaiI YATR 5 cut(s) 12, 38, 102, 191, 380
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 430, 489, 492
FokI GGATG 1 cut(s) 426
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 430, 489, 492
FspBI CTAG 1 cut(s) 480
GluI GCNGC 3 cut(s) 430, 489, 492
HapII CCGG 1 cut(s) 124
HgaI GACGC 2 cut(s) 32, 395
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 1 cut(s) 382
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 1 cut(s) 124
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 219, 232
Hpy188I TCNGA 4 cut(s) 18, 150, 158, 447
Hpy8I GTNNAC 2 cut(s) 219, 232
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 229, 296
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 7 cut(s) 64, 368, 373, 411, 425, 491, 506
HpyF10VI GCNNNNNNNGC 6 cut(s) 338, 347, 356, 365, 476, 485
HpySE526I ACGT 1 cut(s) 362
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 382
KspAI GTTAAC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 349
LpnPI CCDG 6 cut(s) 40, 137, 323, 336, 339, 411
Lsp1109I GCAGC 3 cut(s) 441, 475, 503
LweI GCATC 1 cut(s) 493
MaeI CTAG 1 cut(s) 480
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 296
MboII GAAGA 2 cut(s) 181, 366
MfeI CAATTG 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 5 cut(s) 65, 245, 342, 452, 495
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 4 cut(s) 131, 164, 391, 453
Mph1103I ATGCAT 1 cut(s) 508
MseI TTAA 5 cut(s) 207, 231, 252, 311, 345
MspCI CTTAAG 1 cut(s) 251
MspI CCGG 1 cut(s) 124
MunI CAATTG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 413
MwoI GCNNNNNNNGC 6 cut(s) 338, 347, 356, 365, 476, 485
NlaIII CATG 1 cut(s) 382
NsiI ATGCAT 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 349
PctI GAATGC 1 cut(s) 413
PkrI GCNGC 3 cut(s) 431, 490, 493
PstI CTGCAG 1 cut(s) 493
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 349
SaqAI TTAA 5 cut(s) 207, 231, 252, 311, 345
SatI GCNGC 3 cut(s) 430, 489, 492
SduI GDGCHC 1 cut(s) 165
SetI ASST 3 cut(s) 319, 361, 365
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 5 cut(s) 65, 245, 342, 452, 495
SspMI CTAG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 229, 296
TaiI ACGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 198
TasI AATT 5 cut(s) 65, 245, 342, 452, 495
Tru1I TTAA 5 cut(s) 207, 231, 252, 311, 345
Tru9I TTAA 5 cut(s) 207, 231, 252, 311, 345
TseI GCWGC 3 cut(s) 429, 488, 491
TspDTI ATGAA 3 cut(s) 34, 395, 420
Vha464I CTTAAG 1 cut(s) 251
XspI CTAG 1 cut(s) 480
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.