AT3G61440

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001137
Physical Location & Seq
Forward (+)
22735663 .. 22738131
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61440.3

Sequence Viewer

Length: 1107 bp
ATGGCCTCTGTTTCAAGGAGGTTACTGAGGAGAGAGACGATCCCCTGTTTCAGCCACACCGTGAGGAAACTCTTCTCCACCGTTGGATCTCCTTCTTTTGCTCAGAGACTCAGAGATCTCCCCAAAGACTTCCCCTCTACCAACGCCAAACGTGACGCCTCTCTGCTTATTGGGAAAACGCCTCTTGTGTTCCTCAACAAAGTCACTGAAGGTTGTGAAGCGTATGTTGCAGCCAAACAAGAACATTTCCAGCCAACTTGTAGCATTAAAGACAGACCAGCTATAGCCATGATTGCAGATGCAGAGAAGAAAAAACTAATCATCCCTGGAAAAACAACACTGATAGAGCCTACTTCAGGAAACATGGGAATCAGTTTGGCTTTCATGGCTGCTATGAAAGGGTACAGGATTATAATGACGATGCCTTCGTACACTAGCTTGGAGAGGAGAGTGACGATGAGATCCTTTGGTGCTGAGCTTGTTCTCACTGATCCAGCCAAAGGAATGGGTGGAACTGTTAAGAAAGCTTATGACCTCCTTGATAGTACTCCTGATGCTTTCATGTGTCAACAGTTTGCTAATCCTGCAAACACTCAGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACTTGGAAATGTTGATATATTTGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGGCCGATACCTTAAATCTAAAAACCCCAATGTCAAGATATATGGAGTGGAGCCTGCTGAAAGCAACATACTCAACGGTGGCAAACCAGGTCCACATGCTATCACAGGCAATGGTGTTGGATTCAAACCAGAAATCTTGGATATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTGAGGATGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTCATGGTTGGGATATCGTCGGGAGCTAACACCGTGGCAGCAATTAGACTGGCGAAAATGCCAGAGAATAAAGGCAAACTCATTGTGACAATTCATGCGAGCTTCGGAGAAAGATATCTGTCGTCTGTTCTGTTTGATGAGCTGAGGAAAGAAGCAGAGGAGATGAAGCCAGTTTCAGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

368

Amino Acids

39.93

Weight (kDa)

8.71

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 1 - 218 3.3e-50 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AclWI GGATC 4 cut(s) 34, 94, 456, 485
AcoI YGGCCR 1 cut(s) 700
AcuI CTGAAG 2 cut(s) 228, 339
AcyI GRCGYC 1 cut(s) 156
AdeI CACNNNGTG 1 cut(s) 61
AfaI GTAC 3 cut(s) 404, 431, 547
AfiI CCNNNNNNNGG 2 cut(s) 356, 500
AgsI TTSAA 3 cut(s) 15, 823, 913
AjnI CCWGG 2 cut(s) 325, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 7 cut(s) 281, 438, 478, 527, 947, 1023, 1063
AluI AGCT 7 cut(s) 281, 438, 478, 527, 947, 1023, 1063
Alw26I GTCTC 4 cut(s) 29, 100, 694, 926
AlwI GGATC 4 cut(s) 34, 94, 456, 485
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 2 cut(s) 3, 700
ApeKI GCWGC 3 cut(s) 230, 389, 959
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 617, 788
AvaII GGWCC 2 cut(s) 617, 788
BbvCI CCTCAGC 1 cut(s) 1064
BbvI GCAGC 3 cut(s) 242, 376, 971
BccI CCATC 2 cut(s) 658, 886
BciT130I CCWGG 2 cut(s) 327, 786
BcoDI GTCTC 4 cut(s) 29, 100, 694, 926
BfaI CTAG 2 cut(s) 435, 897
BfmI CTRYAG 1 cut(s) 282
BglII AGATCT 1 cut(s) 115
BisI GCNGC 3 cut(s) 231, 390, 960
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 3 cut(s) 232, 391, 961
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 2 cut(s) 327, 786
Bme18I GGWCC 2 cut(s) 617, 788
BmgT120I GGNCC 2 cut(s) 617, 788
BmiI GGNNCC 1 cut(s) 750
BmrFI CCNGG 2 cut(s) 327, 786
BmsI GCATC 4 cut(s) 289, 411, 544, 871
Bpu10I CCTNAGC 1 cut(s) 1064
Bpu1102I GCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 884
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 926
BsaJI CCNNGG 2 cut(s) 325, 954
BsaXI ACNNNNNCTCC 2 cut(s) 672, 702
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 500
Bse1I ACTGG 3 cut(s) 619, 975, 1091
Bse3DI GCAATG 1 cut(s) 814
BseBI CCWGG 2 cut(s) 327, 786
BseDI CCNNGG 2 cut(s) 325, 954
BseGI GGATG 3 cut(s) 321, 850, 886
BseLI CCNNNNNNNGG 2 cut(s) 356, 500
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 7 cut(s) 17, 116, 124, 465, 608, 612, 1055
BseNI ACTGG 3 cut(s) 619, 975, 1091
BseRI GAGGAG 3 cut(s) 43, 460, 1094
BseXI GCAGC 3 cut(s) 242, 376, 971
BshFI GGCC 2 cut(s) 5, 702
BslI CCNNNNNNNGG 2 cut(s) 356, 500
BsmAI GTCTC 4 cut(s) 29, 100, 694, 926
BsmBI CGTCTC 1 cut(s) 29
BsnI GGCC 2 cut(s) 5, 702
Bso31I GGTCTC 1 cut(s) 926
Bsp143I GATC 5 cut(s) 39, 86, 115, 461, 490
Bsp1720I GCTNAGC 1 cut(s) 474
BspANI GGCC 2 cut(s) 5, 702
BspCNI CTCAG 7 cut(s) 18, 115, 123, 466, 607, 613, 1056
BspLI GGNNCC 1 cut(s) 750
BspPI GGATC 4 cut(s) 34, 94, 456, 485
BspTNI GGTCTC 1 cut(s) 926
BsrDI GCAATG 1 cut(s) 814
BsrI ACTGG 3 cut(s) 619, 975, 1091
BssECI CCNNGG 2 cut(s) 325, 954
BssMI GATC 5 cut(s) 39, 86, 115, 461, 490
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 327, 786
Bst4CI ACNGT 7 cut(s) 61, 82, 517, 573, 688, 776, 955
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 753, 1021
BstDEI CTNAG 7 cut(s) 26, 102, 110, 474, 594, 621, 1064
BstDSI CCRYGG 1 cut(s) 954
BstENI CCTNNNNNAGG 1 cut(s) 354
BstF5I GGATG 3 cut(s) 321, 850, 886
BstKTI GATC 5 cut(s) 42, 89, 118, 464, 493
BstMAI GTCTC 4 cut(s) 29, 100, 694, 926
BstMBI GATC 5 cut(s) 39, 86, 115, 461, 490
BstMWI GCNNNNNNNGC 5 cut(s) 227, 293, 386, 584, 681
BstNI CCWGG 2 cut(s) 327, 786
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 325, 784
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 242, 376, 971
BstX2I RGATCY 3 cut(s) 86, 115, 461
BstXI CCANNNNNNTGG 1 cut(s) 505
BstYI RGATCY 3 cut(s) 86, 115, 461
BsuRI GGCC 2 cut(s) 5, 702
BtgI CCRYGG 1 cut(s) 954
BtsCI GGATG 3 cut(s) 321, 850, 886
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 5 cut(s) 204, 338, 486, 682, 1104
Cac8I GCNNGC 2 cut(s) 753, 1021
CaiI CAGNNNCTG 1 cut(s) 692
Cfr13I GGNCC 2 cut(s) 617, 788
CseI GACGC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 3 cut(s) 403, 430, 546
CviAII CATG 7 cut(s) 289, 364, 385, 562, 794, 925, 1016
CviQI GTAC 3 cut(s) 403, 430, 546
DdeI CTNAG 7 cut(s) 26, 102, 110, 474, 594, 621, 1064
DpnI GATC 5 cut(s) 41, 88, 117, 463, 492
DpnII GATC 5 cut(s) 39, 86, 115, 461, 490
DraIII CACNNNGTG 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 926
Eco32I GATATC 2 cut(s) 936, 1037
Eco47I GGWCC 2 cut(s) 617, 788
Eco57I CTGAAG 2 cut(s) 228, 339
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 325, 784
EcoRV GATATC 2 cut(s) 936, 1037
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 7 cut(s) 292, 367, 388, 565, 797, 928, 1019
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FatI CATG 7 cut(s) 288, 363, 384, 561, 793, 924, 1015
Fnu4HI GCNGC 3 cut(s) 231, 390, 960
FokI GGATG 3 cut(s) 308, 857, 893
Fsp4HI GCNGC 3 cut(s) 231, 390, 960
FspBI CTAG 2 cut(s) 435, 897
GluI GCNGC 3 cut(s) 231, 390, 960
HaeIII GGCC 2 cut(s) 5, 702
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 7 cut(s) 292, 367, 388, 565, 797, 928, 1019
HincII GTYRAC 1 cut(s) 569
HindII GTYRAC 1 cut(s) 569
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 4 cut(s) 108, 369, 598, 819
Hpy166II GTNNAC 3 cut(s) 432, 569, 791
Hpy188I TCNGA 4 cut(s) 105, 113, 597, 1028
Hpy188III TCNNGA 6 cut(s) 357, 551, 620, 733, 863, 942
Hpy8I GTNNAC 3 cut(s) 432, 569, 791
Hpy99I CGWCG 1 cut(s) 943
HpyAV CCTTC 4 cut(s) 102, 203, 435, 911
HpyCH4III ACNGT 7 cut(s) 61, 82, 517, 573, 688, 776, 955
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 4 cut(s) 230, 296, 302, 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 293, 386, 584, 681
HpyF3I CTNAG 7 cut(s) 26, 102, 110, 474, 594, 621, 1064
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 7 cut(s) 292, 367, 388, 565, 797, 928, 1019
Kzo9I GATC 5 cut(s) 39, 86, 115, 461, 490
LmnI GCTCC 2 cut(s) 748, 944
Lsp1109I GCAGC 3 cut(s) 242, 376, 971
LweI GCATC 4 cut(s) 289, 411, 544, 871
MabI ACCWGGT 1 cut(s) 784
MaeI CTAG 2 cut(s) 435, 897
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 5 cut(s) 21, 152, 202, 451, 1006
MalI GATC 5 cut(s) 41, 88, 117, 463, 492
MboI GATC 5 cut(s) 39, 86, 115, 461, 490
MboII GAAGA 3 cut(s) 64, 319, 644
MflI RGATCY 3 cut(s) 86, 115, 461
MluCI AATT 4 cut(s) 669, 902, 963, 1011
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 2 cut(s) 64, 796
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 3 cut(s) 267, 519, 711
MspR9I CCNGG 2 cut(s) 327, 786
MvaI CCWGG 2 cut(s) 327, 786
MwoI GCNNNNNNNGC 5 cut(s) 227, 293, 386, 584, 681
NdeII GATC 5 cut(s) 39, 86, 115, 461, 490
NlaIII CATG 7 cut(s) 292, 367, 388, 565, 797, 928, 1019
NlaIV GGNNCC 1 cut(s) 750
NmuCI GTSAC 4 cut(s) 152, 202, 451, 1006
NspI RCATGY 1 cut(s) 797
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 369, 598, 819
PkrI GCNGC 3 cut(s) 232, 391, 961
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PsiI TTATAA 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 325, 784
PspGI CCWGG 2 cut(s) 325, 784
PspN4I GGNNCC 1 cut(s) 750
PspPI GGNCC 2 cut(s) 617, 788
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 3 cut(s) 86, 115, 461
RsaI GTAC 3 cut(s) 404, 431, 547
RsaNI GTAC 3 cut(s) 403, 430, 546
SaqAI TTAA 3 cut(s) 267, 519, 711
SatI GCNGC 3 cut(s) 231, 390, 960
Sau3AI GATC 5 cut(s) 39, 86, 115, 461, 490
Sau96I GGNCC 2 cut(s) 617, 788
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 2 cut(s) 327, 786
SexAI ACCWGGT 1 cut(s) 784
SfaNI GCATC 4 cut(s) 289, 411, 544, 871
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 2 cut(s) 617, 788
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
Sse9I AATT 4 cut(s) 669, 902, 963, 1011
SspMI CTAG 2 cut(s) 435, 897
StyD4I CCNGG 2 cut(s) 325, 784
TaaI ACNGT 7 cut(s) 61, 82, 517, 573, 688, 776, 955
TaiI ACGT 1 cut(s) 154
TasI AATT 4 cut(s) 669, 902, 963, 1011
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 3 cut(s) 369, 598, 819
Tru1I TTAA 3 cut(s) 267, 519, 711
Tru9I TTAA 3 cut(s) 267, 519, 711
TscAI CASTG 5 cut(s) 211, 345, 493, 682, 1104
TseFI GTSAC 4 cut(s) 152, 202, 451, 1006
TseI GCWGC 3 cut(s) 230, 389, 959
Tsp45I GTSAC 4 cut(s) 152, 202, 451, 1006
TspDTI ATGAA 6 cut(s) 373, 410, 550, 590, 1004, 1100
TspRI CASTG 5 cut(s) 211, 345, 493, 682, 1104
VpaK11BI GGWCC 2 cut(s) 617, 788
XagI CCTNNNNNAGG 1 cut(s) 354
XceI RCATGY 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 435, 897
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.