Rh1BG223300

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001137
Physical Location & Seq
Forward (+)
34221654 .. 34249553
27900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG223300.1

Sequence Viewer

Length: 579 bp
ATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGATCCAACATCAGGAAACATGAGAATCAGCATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGAATGTGTATGAGAGCCTTAGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTCAGGTACATTTTGAAACTACAGGACCAGAGATATGGGAGGATACTAATGGAAAAATATATGGAGTGGAGCTTGCTGAAAGTAATAATATACTAAATGGTGGTAAACTAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGGTGCAGGTGAACTTGTGGAAATGCATGACCAAAACTCTAGAAAACATTTGAGGGGCTGTGAATTCTGGGAAGCTATGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

192

Amino Acids

21.14

Weight (kDa)

5.6

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 9 - 121 4.1e-23 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 491
AasI GACNNNNNNGTC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 491
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 557
AfaI GTAC 2 cut(s) 116, 312
AfiI CCNNNNNNNGG 2 cut(s) 68, 212
AgsI TTSAA 3 cut(s) 7, 320, 451
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 150, 185, 376, 569
AluI AGCT 4 cut(s) 150, 185, 376, 569
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 329, 416
AsuHPI GGTGA 1 cut(s) 515
AvaII GGWCC 2 cut(s) 329, 416
AxyI CCTNAGG 1 cut(s) 178
BauI CACGAG 1 cut(s) 145
BccI CCATC 2 cut(s) 115, 211
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 340
BfaI CTAG 2 cut(s) 413, 534
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 491
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 329, 416
BmgT120I GGNCC 2 cut(s) 329, 416
BmrFI CCNGG 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 512
BsaXI ACNNNNNCTCC 4 cut(s) 190, 213, 220, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 212
Bse1I ACTGG 1 cut(s) 436
Bse21I CCTNAGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 68, 212
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 177, 320
BseNI ACTGG 1 cut(s) 436
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 68, 212
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 178, 319
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 436
BssMI GATC 1 cut(s) 58
BssSI CACGAG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 178, 186, 306
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 98, 182
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 2 cut(s) 339, 463
BstYI RGATCY 1 cut(s) 58
Bsu36I CCTNAGG 1 cut(s) 178
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 329, 416
Csp6I GTAC 2 cut(s) 115, 311
CviAII CATG 5 cut(s) 76, 88, 133, 469, 521
CviQI GTAC 2 cut(s) 115, 311
DdeI CTNAG 3 cut(s) 178, 186, 306
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 329, 416
Eco81I CCTNAGG 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 522
FaeI CATG 5 cut(s) 79, 91, 136, 472, 524
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 5 cut(s) 75, 87, 132, 468, 520
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 2 cut(s) 413, 534
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 5 cut(s) 79, 91, 136, 472, 524
HinfI GANTC 4 cut(s) 81, 193, 254, 447
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 410, 506
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 4 cut(s) 69, 232, 491, 534
Hpy8I GTNNAC 2 cut(s) 410, 506
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 500, 520
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 182
HpyF3I CTNAG 3 cut(s) 178, 186, 306
Hsp92II CATG 5 cut(s) 79, 91, 136, 472, 524
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 3 cut(s) 182, 282, 373
MaeI CTAG 2 cut(s) 413, 534
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 171
MflI RGATCY 1 cut(s) 58
MluCI AATT 2 cut(s) 284, 557
MmeI TCCRAC 3 cut(s) 86, 304, 424
MnlI CCTC 6 cut(s) 215, 216, 337, 429, 487, 540
Mph1103I ATGCAT 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 98, 182
NdeII GATC 1 cut(s) 58
NlaIII CATG 5 cut(s) 79, 91, 136, 472, 524
NsiI ATGCAT 1 cut(s) 522
PaqCI CACCTGC 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 4 cut(s) 81, 193, 254, 447
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 2 cut(s) 329, 416
PspPPI RGGWCCY 1 cut(s) 416
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 116, 312
RsaNI GTAC 2 cut(s) 115, 311
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 2 cut(s) 329, 416
ScrFI CCNGG 1 cut(s) 39
SetI ASST 8 cut(s) 152, 187, 249, 312, 378, 418, 505, 571
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 2 cut(s) 329, 416
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 2 cut(s) 284, 557
SsiI CCGC 1 cut(s) 102
SspMI CTAG 2 cut(s) 413, 534
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 425
TasI AATT 2 cut(s) 284, 557
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 4 cut(s) 81, 193, 254, 447
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 329, 416
XagI CCTNNNNNAGG 1 cut(s) 210
XapI RAATTY 1 cut(s) 557
XbaI TCTAGA 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 2 cut(s) 413, 534
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.