Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001137

Physical Location & Seq

Genomic Coordinates Forward (+)

32461123 .. 32464841

Gene Structure 3719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00025850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTACACTCCAACAATTCTCAAACCCCGCCAATACTCAGGACCTGAGATATGGTGACACCTTTGTAATGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAATACCCTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTAGAAACCCTAAAGTACTGCTAGAGAATCGATCAGACACCTATTTCTCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

100

Amino Acids

10.8

Weight (kDa)

5.34

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	10 - 84	7e-11	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61440 AT3G61440 AT3G61440 AT3G61440
fragaria_vesca	FvH4_7g14710
malus_domestica	MD01G1065600.v1.1 MD07G1135000.v1.1
prunus_persica	Prupe.2G172800_v2.0.a1
pyrus_communis	pycom01g09490 pycom07g13220
rosa_chinensis	RchiOBHm_Chr1g0322951 RchiOBHm_Chr1g0327551 RchiOBHm_Chr1g0327561 RchiOBHm_Chr1g0356641 RchiOBHm_Chr2g0170281 RchiOBHm_Chr3g0492881 RchiOBHm_Chr5g0039681 RchiOBHm_Chr5g0054831 RchiOBHm_Chr6g0250541 RchiOBHm_Chr6g0250851 RchiOBHm_Chr7g0210971 RchiOBHm_Chr7g0222251 RchiOBHm_Chr7g0222261
rosa_laevigata	RLG00000001565 RLG00000002082 RLG00000022915 RLG00000028090 RLG00000029440 RLG00000029484 RLG00000032412 RLG00000036876
rosa_multiflora	Rmu_sc0001644.1_g000033 Rmu_sc0009428.1_g000004 Rmu_sc0012929.1_g000002 Rmu_ssc0000270.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025850 Rroxscaffold_1G00026260 Rroxscaffold_1G00032060 Rroxscaffold_3G00237260 Rroxscaffold_4G00299460 Rroxscaffold_4G00322970 Rroxscaffold_5G00365280 Rroxscaffold_7G00156280
rosa_rugosa	Rorug01G0240400 Rorug01G0250300 Rorug05G0288100 Rorug05G0289100.1
rosa_samantha	Rh1BG223300 Rh1BG231800 Rh1CG247600 Rh1DG250200 Rh5CG392800 Rh5DG268500 Rh6CG145900 Rh7BG266300
rosa_wichuraiana	Rw1G023370 Rw6G009010 Rw7G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	2 cut(s)	81, 135
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	140
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	269
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	142, 207
BmrFI	CCNGG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	277
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	89, 104, 288
BshNI	GGYRCC	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	278
BspACI	CCGC	2 cut(s)	81, 135
BspCNI	CTCAG	3 cut(s)	90, 103, 289
BspDI	ATCGAT	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	142, 207
BspT107I	GGYRCC	1 cut(s)	140
BssMI	GATC	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	13, 162
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	90, 98, 297
BstKTI	GATC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	277
BsuTUI	ATCGAT	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	277
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	263
CviJI	RGCY	2 cut(s)	23, 208
CviKI_1	RGCY	2 cut(s)	23, 208
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	3 cut(s)	90, 98, 297
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	244
FaiI	YATR	5 cut(s)	27, 105, 196, 198, 227
FauI	CCCGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	269
HinfI	GANTC	2 cut(s)	38, 274
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	283, 298
Hpy188III	TCNNGA	2 cut(s)	16, 92
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	2 cut(s)	13, 162
HpyF3I	CTNAG	3 cut(s)	90, 98, 297
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	7 cut(s)	77, 110, 135, 195, 222, 231, 258
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MluCI	AATT	2 cut(s)	68, 126
MmeI	TCCRAC	2 cut(s)	88, 136
MnlI	CCTC	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	142, 207
NmuCI	GTSAC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	38, 274
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	142, 207
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	5 cut(s)	33, 99, 116, 250, 290
SexAI	ACCWGGT	1 cut(s)	244
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	68, 126
SsiI	CCGC	2 cut(s)	81, 135
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	13, 162
TaqI	TCGA	1 cut(s)	277
TasI	AATT	2 cut(s)	68, 126
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	38, 274
TseFI	GTSAC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	94
XspI	CTAG	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.