RLG00000022915

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001137
Physical Location & Seq
Reverse (-)
15081068 .. 15082760
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022915

Sequence Viewer

Length: 627 bp
ATGAAAGGGTTCTATGCTTTGCTTATCGGCATTGGCTGGAAATTTGCATTGACAATTGCTATAATACAAAAATCATATCTGGATGTTTTCATGGTGTACATATTAATGAACATAGTTTTGGTGGCATTAGCTGGGTCTGGTATTCCAGAAATCAAGGGGTGTTTAAATGGGGTCGGAATTCATGGTGTCCTACTTTTCATAACATTGACTGGAAAGGTTTTGCTTGCTATTACTGTTCCTGATTCAAGTGCTCTATCTGTCAGAAGATTTGTGTTTAAGGTGTATCTCTTATTTCTTCTTCATTCTACAACTGTAAAATTAAGATTGATAAAACCAGTACTTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGATCCAACATCAGGAAACATGAGAATCAACATGGCTTTTATGGCTGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTTAACGAGCTTGGAGAGAAGAATGAGTATGAGAACCTTAGGTGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTAGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

209

Amino Acids

22.73

Weight (kDa)

10.0

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 102 - 204 1.6e-11 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 481
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 2 cut(s) 41, 177
AfaI GTAC 3 cut(s) 98, 339, 461
AfiI CCNNNNNNNGG 2 cut(s) 413, 557
AgsI TTSAA 2 cut(s) 246, 352
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 2 cut(s) 131, 495
AluI AGCT 2 cut(s) 131, 495
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 41, 177
AseI ATTAAT 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 8
AxyI CCTNAGG 2 cut(s) 523, 617
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 460, 556
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 384
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
BmcAI AGTACT 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 346
BpmI CTGGAG 1 cut(s) 405
BsaXI ACNNNNNCTCC 4 cut(s) 535, 558, 565, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 557
Bse1I ACTGG 2 cut(s) 214, 335
Bse21I CCTNAGG 2 cut(s) 523, 617
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 88, 567
BseLI CCNNNNNNNGG 2 cut(s) 413, 557
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 214, 335
BseXI GCAGC 1 cut(s) 433
BseYI CCCAGC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 413, 557
Bsp1286I GDGCHC 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 523
BspPI GGATC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 2 cut(s) 214, 335
BssMI GATC 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 235, 313, 574
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 523, 531, 617
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 2 cut(s) 88, 567
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
Bsu36I CCTNAGG 2 cut(s) 523, 617
BtsCI GGATG 2 cut(s) 88, 567
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 225
Csp6I GTAC 3 cut(s) 97, 338, 460
CviAII CATG 5 cut(s) 91, 182, 421, 433, 478
CviJI RGCY 8 cut(s) 36, 131, 372, 437, 446, 495, 584, 622
CviKI_1 RGCY 8 cut(s) 36, 131, 372, 437, 446, 495, 584, 622
CviQI GTAC 3 cut(s) 97, 338, 460
DdeI CTNAG 3 cut(s) 523, 531, 617
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DraI TTTAAA 1 cut(s) 165
DrdI GACNNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 481
Eco81I CCTNAGG 2 cut(s) 523, 617
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 382
FaeI CATG 5 cut(s) 94, 185, 424, 436, 481
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FatI CATG 5 cut(s) 90, 181, 420, 432, 477
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 2 cut(s) 95, 574
Fsp4HI GCNGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 447
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 405
Hin1II CATG 5 cut(s) 94, 185, 424, 436, 481
HinfI GANTC 4 cut(s) 242, 426, 538, 599
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 176, 263, 399
Hpy188III TCNNGA 5 cut(s) 80, 146, 239, 414, 577
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 3 cut(s) 235, 313, 574
HpyCH4V TGCA 2 cut(s) 47, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 3 cut(s) 523, 531, 617
Hsp92II CATG 5 cut(s) 94, 185, 424, 436, 481
Kzo9I GATC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 346
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 4 cut(s) 276, 287, 290, 516
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 4 cut(s) 41, 54, 177, 317
MmeI TCCRAC 2 cut(s) 154, 431
MnlI CCTC 2 cut(s) 560, 561
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 6 cut(s) 104, 164, 276, 320, 377, 488
MslI CAYNNNNRTG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 443
NdeII GATC 1 cut(s) 403
NlaIII CATG 5 cut(s) 94, 185, 424, 436, 481
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 242, 426, 538, 599
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 3 cut(s) 98, 339, 461
RsaNI GTAC 3 cut(s) 97, 338, 460
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 6 cut(s) 104, 164, 276, 320, 377, 488
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 1 cut(s) 403
ScaI AGTACT 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 253
SetI ASST 7 cut(s) 133, 219, 282, 497, 524, 529, 594
SfaNI GCATC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 4 cut(s) 41, 54, 177, 317
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 3 cut(s) 235, 313, 574
TasI AATT 4 cut(s) 41, 54, 177, 317
TatI WGTACW 2 cut(s) 96, 337
TfiI GAWTC 4 cut(s) 242, 426, 538, 599
Tru1I TTAA 6 cut(s) 104, 164, 276, 320, 377, 488
Tru9I TTAA 6 cut(s) 104, 164, 276, 320, 377, 488
TscAI CASTG 1 cut(s) 550
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 7 cut(s) 17, 79, 122, 170, 187, 290, 467
TspRI CASTG 1 cut(s) 550
VspI ATTAAT 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 555
XapI RAATTY 2 cut(s) 41, 177
XmnI GAANNNNTTC 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.