Rroxscaffold_3G00237260

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001137
Physical Location & Seq
Reverse (-)
24868312 .. 24875428
7117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237260.1

Sequence Viewer

Length: 285 bp
ATGACCTTTTGGAATCCACTCCAAATGCCTTTATGCTCAAACCCTGCCAAGACTCAGGTACATTCTGAAACTGCAGGACCTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTAATAGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAATCTACTTTGTGTATGTGATTTCACTGACAGTCTTCATCACCAGTGTGCTTCCATTGAATCAAGGAGAGAATGGAGTCAAAATGGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

94

Amino Acids

10.35

Weight (kDa)

5.1

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 11 - 70 4.4e-14 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 1 cut(s) 138
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 1 cut(s) 251
AleI CACNNNNGTG 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 218
BccI CCATC 1 cut(s) 155
BciVI GTATCC 1 cut(s) 88
BfmI CTRYAG 1 cut(s) 72
BfuI GTATCC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 68, 72
BseNI ACTGG 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 67, 73
BspLI GGNNCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 165, 224
BstDEI CTNAG 2 cut(s) 54, 81
BstSFI CTRYAG 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 218
BsuI GTATCC 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 216, 242
CaiI CAGNNNCTG 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 59
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 2 cut(s) 54, 81
Eco47I GGWCC 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 77
FaiI YATR 3 cut(s) 34, 88, 208
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 4 cut(s) 13, 52, 251, 268
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 165, 224
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 54, 81
HpySE526I ACGT 1 cut(s) 280
LpnPI CCDG 7 cut(s) 41, 57, 60, 93, 138, 198, 248
MaeII ACGT 1 cut(s) 280
MboII GAAGA 1 cut(s) 218
MluCI AATT 1 cut(s) 129
MlyI GAGTC 2 cut(s) 46, 277
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 2 cut(s) 85, 134
MslI CAYNNNNRTG 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 237
PfeI GAWTC 2 cut(s) 13, 251
PleI GAGTC 2 cut(s) 46, 276
PpsI GAGTC 2 cut(s) 46, 276
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 2 cut(s) 46, 277
SetI ASST 4 cut(s) 8, 60, 82, 283
SfcI CTRYAG 1 cut(s) 72
SgeI CNNG 9 cut(s) 56, 61, 68, 87, 92, 165, 197, 247, 267
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 138
TaaI ACNGT 2 cut(s) 165, 224
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 129
TfiI GAWTC 2 cut(s) 13, 251
TscAI CASTG 2 cut(s) 223, 242
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 2 cut(s) 223, 242
VpaK11BI GGWCC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.