Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001137

Physical Location & Seq

Genomic Coordinates Reverse (-)

51735932 .. 51747635

Gene Structure 11704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG392800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATAGTACTCCAACAATTCTCAAACCCCGCCAATACTCAGGACCTGAGATATGGTGACACCTTTGTAATGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGCAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGAGACGAATAAAAGTTTTACTTGAAGAAGCACATGACTGGAAGCTTTCCACTCCATGCAGCTGCTTCAGCCAGGTGTTGGAAAGAGTTGCCTGCTTTTACGATTCTCTGATGGCTCCTTCACAACCAGCTTCATACCACTATTGGTTTAGTGATCCTGTTGGAAGGGGGTGTGGGTGTGCAAGGAGAAGAGTTGGTGCTTGGAGGTTGCATGTATTCAAGAAGCTGGGAAGGCCAGATTTTTTGGTACTCTTTGAGGCAGAGGTTTGGACTGGAATCAAAGAAAGAAGCTCTAGAGTTCTGCTACCGTACTGTTCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

216

Amino Acids

23.92

Weight (kDa)

8.45

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	38 - 123	2.8e-13	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61440 AT3G61440 AT3G61440 AT3G61440
fragaria_vesca	FvH4_7g14710
malus_domestica	MD01G1065600.v1.1 MD07G1135000.v1.1
prunus_persica	Prupe.2G172800_v2.0.a1
pyrus_communis	pycom01g09490 pycom07g13220
rosa_chinensis	RchiOBHm_Chr1g0322951 RchiOBHm_Chr1g0327551 RchiOBHm_Chr1g0327561 RchiOBHm_Chr1g0356641 RchiOBHm_Chr2g0170281 RchiOBHm_Chr3g0492881 RchiOBHm_Chr5g0039681 RchiOBHm_Chr5g0054831 RchiOBHm_Chr6g0250541 RchiOBHm_Chr6g0250851 RchiOBHm_Chr7g0210971 RchiOBHm_Chr7g0222251 RchiOBHm_Chr7g0222261
rosa_laevigata	RLG00000001565 RLG00000002082 RLG00000022915 RLG00000028090 RLG00000029440 RLG00000029484 RLG00000032412 RLG00000036876
rosa_multiflora	Rmu_sc0001644.1_g000033 Rmu_sc0009428.1_g000004 Rmu_sc0012929.1_g000002 Rmu_ssc0000270.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025850 Rroxscaffold_1G00026260 Rroxscaffold_1G00032060 Rroxscaffold_3G00237260 Rroxscaffold_4G00299460 Rroxscaffold_4G00322970 Rroxscaffold_5G00365280 Rroxscaffold_7G00156280
rosa_rugosa	Rorug01G0240400 Rorug01G0250300 Rorug05G0288100 Rorug05G0289100.1
rosa_samantha	Rh1BG223300 Rh1BG231800 Rh1CG247600 Rh1DG250200 Rh5CG392800 Rh5DG268500 Rh6CG145900 Rh7BG266300
rosa_wichuraiana	Rw1G023370 Rw6G009010 Rw7G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	406
AciI	CCGC	2 cut(s)	84, 138
AclWI	GGATC	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	379
AfaI	GTAC	3 cut(s)	63, 576, 638
AfiI	CCNNNNNNNGG	2 cut(s)	153, 406
AgsI	TTSAA	3 cut(s)	286, 353, 547
AjnI	CCWGG	2 cut(s)	247, 399
AluBI	AGCT	5 cut(s)	373, 390, 458, 553, 618
AluI	AGCT	5 cut(s)	373, 390, 458, 553, 618
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	560
ApeKI	GCWGC	2 cut(s)	387, 390
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	97, 251
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	97, 251
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	377, 399
BccI	CCATC	2 cut(s)	155, 433
BciT130I	CCWGG	2 cut(s)	249, 401
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	621
BisI	GCNGC	2 cut(s)	388, 391
BlsI	GCNGC	2 cut(s)	389, 392
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	249, 401
Bme18I	GGWCC	2 cut(s)	97, 251
BmgT120I	GGNCC	2 cut(s)	97, 251
BmiI	GGNNCC	3 cut(s)	145, 210, 444
BmrFI	CCNGG	2 cut(s)	249, 401
BpuEI	CTTGAG	1 cut(s)	347
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 406
Bse1I	ACTGG	3 cut(s)	271, 371, 604
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	249, 401
BseLI	CCNNNNNNNGG	2 cut(s)	153, 406
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	92, 107
BseNI	ACTGG	3 cut(s)	271, 371, 604
BseXI	GCAGC	2 cut(s)	377, 399
BseYI	CCCAGC	1 cut(s)	553
BshFI	GGCC	1 cut(s)	562
BshNI	GGYRCC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	153, 406
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	562
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	2 cut(s)	84, 138
BspANI	GGCC	1 cut(s)	562
BspCNI	CTCAG	2 cut(s)	93, 106
BspLI	GGNNCC	3 cut(s)	145, 210, 444
BspPI	GGATC	1 cut(s)	476
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	271, 371, 604
BssMI	GATC	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	249, 401
Bst4CI	ACNGT	4 cut(s)	13, 165, 636, 641
Bst6I	CTCTTC	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	213, 421
BstDEI	CTNAG	2 cut(s)	93, 101
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	481
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 559
BstNI	CCWGG	2 cut(s)	249, 401
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	2 cut(s)	247, 399
BstV1I	GCAGC	2 cut(s)	377, 399
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	213, 421
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	97, 251
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	62, 575, 637
CviAII	CATG	4 cut(s)	304, 362, 384, 539
CviQI	GTAC	3 cut(s)	62, 575, 637
DdeI	CTNAG	2 cut(s)	93, 101
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	97, 251
Eco57I	CTGAAG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	97, 251
EcoRII	CCWGG	2 cut(s)	247, 399
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	4 cut(s)	307, 365, 387, 542
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	4 cut(s)	303, 361, 383, 538
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	388, 391
Fsp4HI	GCNGC	2 cut(s)	388, 391
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	2 cut(s)	388, 391
GsaI	CCCAGC	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	562
Hin1II	CATG	4 cut(s)	307, 365, 387, 542
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	4 cut(s)	38, 282, 431, 603
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	5 cut(s)	16, 95, 326, 547, 621
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	4 cut(s)	13, 456, 486, 552
HpyCH4III	ACNGT	4 cut(s)	13, 165, 636, 641
HpyCH4V	TGCA	3 cut(s)	387, 509, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 559
HpyF3I	CTNAG	2 cut(s)	93, 101
Hsp92II	CATG	4 cut(s)	307, 365, 387, 542
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	208, 448
Lsp1109I	GCAGC	2 cut(s)	377, 399
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	2 cut(s)	365, 528
MluCI	AATT	2 cut(s)	71, 129
MmeI	TCCRAC	5 cut(s)	91, 139, 259, 387, 469
MnlI	CCTC	5 cut(s)	134, 264, 525, 577, 583
MroXI	GAANNNNTTC	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	249, 401
MvaI	CCWGG	2 cut(s)	249, 401
MwoI	GCNNNNNNNGC	2 cut(s)	396, 559
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	4 cut(s)	307, 365, 387, 542
NlaIV	GGNNCC	3 cut(s)	145, 210, 444
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	4 cut(s)	38, 282, 431, 603
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	389, 392
PpuMI	RGGWCCY	2 cut(s)	97, 251
Psp5II	RGGWCCY	2 cut(s)	97, 251
Psp6I	CCWGG	2 cut(s)	247, 399
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	2 cut(s)	247, 399
PspN4I	GGNNCC	3 cut(s)	145, 210, 444
PspPI	GGNCC	2 cut(s)	97, 251
PspPPI	RGGWCCY	2 cut(s)	97, 251
PstNI	CAGNNNCTG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	390
RsaI	GTAC	3 cut(s)	63, 576, 638
RsaNI	GTAC	3 cut(s)	62, 575, 637
SatI	GCNGC	2 cut(s)	388, 391
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	2 cut(s)	97, 251
ScaI	AGTACT	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	249, 401
SexAI	ACCWGGT	1 cut(s)	247
SinI	GGWCC	2 cut(s)	97, 251
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	2 cut(s)	71, 129
SsiI	CCGC	2 cut(s)	84, 138
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	247, 399
TaaI	ACNGT	4 cut(s)	13, 165, 636, 641
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	71, 129
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	4 cut(s)	38, 282, 431, 603
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	387, 390
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	97, 251
XbaI	TCTAGA	1 cut(s)	620
XceI	RCATGY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	621
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.