Rroxscaffold_7G00156280

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001137
Physical Location & Seq
Reverse (-)
36509 .. 38833
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156280.1

Sequence Viewer

Length: 525 bp
ATGATGTTTTGTTGCAGACCAGCACTTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTATTTAACTCGATAGATCCAACATCAGGAAACATGAGAATCAACATGGCTTTTATGGCCGCAATGAAAGGGTATAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGATTGTGTATGAGAGCCTTAGGAGCTGAGTTGATTCTCACCGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTCGGATATATGGAGTGGAGCTTGTTGAAAGTAATAATATACTAAATGATGGTAAACCAGGTGTCCATTTGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGTTGGAGAATACAATTTGTACACCAAAACGACGTTGGATTTTCTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

174

Amino Acids

19.24

Weight (kDa)

7.66

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 6 - 116 3.6e-16 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 129
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 3 cut(s) 98, 242, 336
AgsI TTSAA 3 cut(s) 37, 362, 430
AjnI CCWGG 2 cut(s) 67, 391
AluBI AGCT 3 cut(s) 180, 215, 355
AluI AGCT 3 cut(s) 180, 215, 355
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 220
AxyI CCTNAGG 1 cut(s) 208
BauI CACGAG 1 cut(s) 175
BccI CCATC 3 cut(s) 145, 241, 377
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 69, 393
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 69, 393
BmrFI CCNGG 2 cut(s) 69, 393
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 491
BsaXI ACNNNNNCTCC 4 cut(s) 220, 243, 250, 273
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 242, 336
Bse1I ACTGG 1 cut(s) 415
Bse21I CCTNAGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 69, 393
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 3 cut(s) 98, 242, 336
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 415
BshFI GGCC 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 98, 242, 336
BsnI GGCC 1 cut(s) 131
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 208
BspPI GGATC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 1 cut(s) 415
BssMI GATC 1 cut(s) 88
BssSI CACGAG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 69, 393
Bst4CI ACNGT 1 cut(s) 259
BstAUI TGTACA 1 cut(s) 492
BstDEI CTNAG 2 cut(s) 208, 216
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 128, 212
BstNI CCWGG 2 cut(s) 69, 393
BstSCI CCNGG 2 cut(s) 67, 391
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 442
BstYI RGATCY 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 208
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 252
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 106, 118, 163, 448
CviJI RGCY 8 cut(s) 57, 122, 131, 180, 206, 215, 269, 355
CviKI_1 RGCY 8 cut(s) 57, 122, 131, 180, 206, 215, 269, 355
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 208, 216
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 129
Eco81I CCTNAGG 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 67, 391
FaeI CATG 4 cut(s) 109, 121, 166, 451
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FatI CATG 4 cut(s) 105, 117, 162, 447
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 4 cut(s) 109, 121, 166, 451
HinfI GANTC 4 cut(s) 111, 223, 284, 426
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 389, 495
Hpy188I TCNGA 2 cut(s) 339, 519
Hpy188III TCNNGA 3 cut(s) 99, 262, 470
Hpy8I GTNNAC 2 cut(s) 389, 495
Hpy99I CGWCG 1 cut(s) 508
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 212
HpyF3I CTNAG 2 cut(s) 208, 216
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 4 cut(s) 109, 121, 166, 451
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 212, 312, 352
LpnPI CCDG 8 cut(s) 33, 54, 81, 84, 339, 378, 396, 405
LweI GCATC 1 cut(s) 31
MabI ACCWGGT 1 cut(s) 391
MaeII ACGT 1 cut(s) 506
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 201
MflI RGATCY 1 cut(s) 88
MluCI AATT 2 cut(s) 314, 487
MmeI TCCRAC 5 cut(s) 116, 334, 403, 457, 489
MnlI CCTC 3 cut(s) 245, 246, 466
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 62, 78
MspR9I CCNGG 2 cut(s) 69, 393
MvaI CCWGG 2 cut(s) 69, 393
MwoI GCNNNNNNNGC 2 cut(s) 128, 212
NdeII GATC 1 cut(s) 88
NlaIII CATG 4 cut(s) 109, 121, 166, 451
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 4 cut(s) 111, 223, 284, 426
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 67, 391
PspGI CCWGG 2 cut(s) 67, 391
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 62, 78
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 69, 393
SetI ASST 7 cut(s) 182, 217, 279, 357, 397, 477, 509
SexAI ACCWGGT 1 cut(s) 391
SfaNI GCATC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 2 cut(s) 314, 487
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 67, 391
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 509
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 314, 487
TatI WGTACW 1 cut(s) 492
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 4 cut(s) 111, 223, 284, 426
Tru1I TTAA 2 cut(s) 62, 78
Tru9I TTAA 2 cut(s) 62, 78
TspDTI ATGAA 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 2 cut(s) 407, 505
XmnI GAANNNNTTC 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.