Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001137

Physical Location & Seq

Genomic Coordinates Reverse (-)

86028042 .. 86030132

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCAGGTGACTGAAGTTCCACCAAAACTGAACATTTGGAGACATTTTATAAATGTGGAGCCTATCACCTTTGGAAGTAATGTTTTGCTTGCTATTACTGTTCCTGATTCAAGTGATCTATCTGTCAGAAGATTTGTGTTTCAGGTGTATCTCTTATTTCTAGTTCATTCTACAACTGTAAAATTAAGATTGAGAAAACTAGCACTTGCTATGTTCAATGACGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTATGATAGATCCAACATTAGGAAACATGAGAATCAACATGGCTTTTATGGCCACTATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGATTGTGTATGAGAGCCTTAGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAGTTCTCAAACCCTGCCAATACTCAGATATATGGAGAGGAGCTTGTTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGCTACTTCATGTATATGATTTCGCTGACAAAGTCTTCAACACCAGTGGTAACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

237

Amino Acids

26.25

Weight (kDa)

8.92

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	68 - 176	4.4e-15	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61440 AT3G61440 AT3G61440 AT3G61440
fragaria_vesca	FvH4_7g14710
malus_domestica	MD01G1065600.v1.1 MD07G1135000.v1.1
prunus_persica	Prupe.2G172800_v2.0.a1
pyrus_communis	pycom01g09490 pycom07g13220
rosa_chinensis	RchiOBHm_Chr1g0322951 RchiOBHm_Chr1g0327551 RchiOBHm_Chr1g0327561 RchiOBHm_Chr1g0356641 RchiOBHm_Chr2g0170281 RchiOBHm_Chr3g0492881 RchiOBHm_Chr5g0039681 RchiOBHm_Chr5g0054831 RchiOBHm_Chr6g0250541 RchiOBHm_Chr6g0250851 RchiOBHm_Chr7g0210971 RchiOBHm_Chr7g0222251 RchiOBHm_Chr7g0222261
rosa_laevigata	RLG00000001565 RLG00000002082 RLG00000022915 RLG00000028090 RLG00000029440 RLG00000029484 RLG00000032412 RLG00000036876
rosa_multiflora	Rmu_sc0001644.1_g000033 Rmu_sc0009428.1_g000004 Rmu_sc0012929.1_g000002 Rmu_ssc0000270.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025850 Rroxscaffold_1G00026260 Rroxscaffold_1G00032060 Rroxscaffold_3G00237260 Rroxscaffold_4G00299460 Rroxscaffold_4G00322970 Rroxscaffold_5G00365280 Rroxscaffold_7G00156280
rosa_rugosa	Rorug01G0240400 Rorug01G0250300 Rorug05G0288100 Rorug05G0289100.1
rosa_samantha	Rh1BG223300 Rh1BG231800 Rh1CG247600 Rh1DG250200 Rh5CG392800 Rh5DG268500 Rh6CG145900 Rh7BG266300
rosa_wichuraiana	Rw1G023370 Rw6G009010 Rw7G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AasI	GACNNNNNNGTC	1 cut(s)	346
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	278, 422
AgsI	TTSAA	5 cut(s)	111, 217, 542, 610, 691
AjnI	CCWGG	2 cut(s)	247, 571
AluBI	AGCT	4 cut(s)	360, 395, 535, 655
AluI	AGCT	4 cut(s)	360, 395, 535, 655
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	19, 58
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	311
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	679
BccI	CCATC	2 cut(s)	325, 421
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	249, 573
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	161, 200
Bme1390I	CCNGG	2 cut(s)	249, 573
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	249, 573
BpiI	GAAGAC	1 cut(s)	679
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	671
BsaXI	ACNNNNNCTCC	4 cut(s)	400, 423, 430, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 422
Bse1I	ACTGG	2 cut(s)	595, 696
Bse21I	CCTNAGG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	249, 573
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	278, 422
BseMII	CTCAG	2 cut(s)	387, 530
BseNI	ACTGG	2 cut(s)	595, 696
BseRI	GAGGAG	1 cut(s)	545
BshFI	GGCC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	278, 422
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	115, 268
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	388, 529
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	595, 696
BssMI	GATC	2 cut(s)	115, 268
BssSI	CACGAG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	249, 573
Bst4CI	ACNGT	4 cut(s)	100, 178, 439, 495
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	388, 396, 516
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	2 cut(s)	118, 271
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	115, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 392
BstNI	CCWGG	2 cut(s)	249, 573
BstSCI	CCNGG	2 cut(s)	247, 571
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	408, 703
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	230
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	1 cut(s)	325
CspCI	CAANNNNNGTGG	1 cut(s)	679
CviAII	CATG	5 cut(s)	286, 298, 343, 628, 662
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	388, 396, 516
DpnI	GATC	2 cut(s)	117, 270
DpnII	GATC	2 cut(s)	115, 268
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	247, 571
FaeI	CATG	5 cut(s)	289, 301, 346, 631, 665
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	5 cut(s)	285, 297, 342, 627, 661
FokI	GGATG	1 cut(s)	439
FspBI	CTAG	2 cut(s)	161, 200
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	311
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	5 cut(s)	289, 301, 346, 631, 665
HinfI	GANTC	5 cut(s)	107, 291, 403, 464, 606
HphI	GGTGA	2 cut(s)	19, 58
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	2 cut(s)	128, 519
Hpy188III	TCNNGA	4 cut(s)	104, 442, 650, 708
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	100, 178, 439, 495
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 392
HpyF3I	CTNAG	3 cut(s)	388, 396, 516
Hsp92II	CATG	5 cut(s)	289, 301, 346, 631, 665
Kzo9I	GATC	2 cut(s)	115, 268
LmnI	GCTCC	4 cut(s)	58, 392, 492, 532
LpnPI	CCDG	8 cut(s)	117, 128, 234, 261, 519, 558, 576, 585
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	2 cut(s)	161, 200
MaeIII	GTNAC	2 cut(s)	7, 701
MalI	GATC	2 cut(s)	117, 270
MboI	GATC	2 cut(s)	115, 268
MboII	GAAGA	3 cut(s)	141, 381, 679
MflI	RGATCY	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	1 cut(s)	182
MluNI	TGGCCA	1 cut(s)	311
MmeI	TCCRAC	3 cut(s)	296, 514, 583
MnlI	CCTC	4 cut(s)	425, 426, 523, 588
Mox20I	TGGCCA	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	2 cut(s)	185, 242
MslI	CAYNNNNRTG	1 cut(s)	666
Msp20I	TGGCCA	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	249, 573
MvaI	CCWGG	2 cut(s)	249, 573
MwoI	GCNNNNNNNGC	2 cut(s)	308, 392
NdeII	GATC	2 cut(s)	115, 268
NlaIII	CATG	5 cut(s)	289, 301, 346, 631, 665
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	5 cut(s)	107, 291, 403, 464, 606
PflFI	GACNNNGTC	1 cut(s)	683
PfoI	TCCNGGA	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	247, 571
PspGI	CCWGG	2 cut(s)	247, 571
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	575
PspPPI	RGGWCCY	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	683
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	185, 242
Sau3AI	GATC	2 cut(s)	115, 268
Sau96I	GGNCC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	249, 573
SetI	ASST	9 cut(s)	9, 71, 147, 362, 397, 459, 537, 577, 657
SexAI	ACCWGGT	1 cut(s)	571
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	1 cut(s)	182
SspMI	CTAG	2 cut(s)	161, 200
StyD4I	CCNGG	2 cut(s)	247, 571
TaaI	ACNGT	4 cut(s)	100, 178, 439, 495
TaqI	TCGA	1 cut(s)	584
TasI	AATT	1 cut(s)	182
TfiI	GAWTC	5 cut(s)	107, 291, 403, 464, 606
Tru1I	TTAA	2 cut(s)	185, 242
Tru9I	TTAA	2 cut(s)	185, 242
TscAI	CASTG	2 cut(s)	415, 703
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	155, 332, 650
TspRI	CASTG	2 cut(s)	415, 703
Tth111I	GACNNNGTC	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	575
XagI	CCTNNNNNAGG	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	2 cut(s)	161, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.