RLG00000029440

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
38785492 .. 38790962
5471 bp
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UTR
Exon/CDS
Intron
RLM00000029440

Sequence Viewer

Length: 858 bp
ATGGCCTCTGTAAGTGTGGCTCCTTTATCTGGATTAAGATACCACAGTGGAATTACAGTTGCTATCAATAGTTTGCCCAGTGAGACGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGCAACCGTTGTAGATGGTAATGGAACAGAAACGGGTCATATAATTGTCACAACTATTGGTGGAAGAAATGGAAACAAAGGAAATACAGTTTTGGAGAAGGAAAACCTAGAAGCGAGGGATTTAGCTGCAAGGGAGGTTTTGCTTGCTATTACTGTTCCTGATTCAAGTGATCTATCTGTCAGAAGATTTGTGTTTCAGGTGTATCTCTTATTTCTTGTTCATTCTACAACTGTAAAATTAAGATTGAGAAAACCAGCACTTGCTTTGTTCAATGACGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGATCCAACATCAGGAAACATGAGAATCAACATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACATGAGCTTGGAGAGAAGATTGTGTATGAGAGCCTTAGGAGCTGAGTTGATTCTCACTGGCCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTATTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTCAAATATATGGAGAGGAGCTTGTTGAAAGTCCTCATTCGATTACTGGAAATGGGGTTAGATTCAAACCCAATATATTGGACATGGGCATAATGGAAAGAGTTCTTGAGCTACTTCATGTATATGATTTCGCTGACAAAGTCTTCAACACCAGTGGTAACTCTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

286

Amino Acids

31.16

Weight (kDa)

7.82

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 127 - 235 1e-16 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 523
AciI CCGC 1 cut(s) 489
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 486
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 3 cut(s) 29, 455, 599
AgsI TTSAA 5 cut(s) 288, 394, 719, 757, 838
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 5 cut(s) 248, 537, 572, 712, 802
AluI AGCT 5 cut(s) 248, 537, 572, 712, 802
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 440
AoxI GGCC 3 cut(s) 3, 486, 589
ApeKI GCWGC 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 792
AspS9I GGNCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 565
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BbsI GAAGAC 1 cut(s) 826
BbvI GCAGC 1 cut(s) 235
BccI CCATC 3 cut(s) 131, 502, 598
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 230
BisI GCNGC 2 cut(s) 249, 489
BlsI GCNGC 2 cut(s) 250, 490
Bme1390I CCNGG 1 cut(s) 426
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 826
BpmI CTGGAG 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 818
BsaXI ACNNNNNCTCC 4 cut(s) 577, 600, 607, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 455, 599
Bse1I ACTGG 4 cut(s) 78, 592, 742, 843
Bse21I CCTNAGG 1 cut(s) 565
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 112, 609
BseLI CCNNNNNNNGG 3 cut(s) 29, 455, 599
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 4 cut(s) 78, 592, 742, 843
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 3 cut(s) 5, 488, 591
BslI CCNNNNNNNGG 3 cut(s) 29, 455, 599
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 3 cut(s) 5, 488, 591
Bsp143I GATC 2 cut(s) 292, 445
BspACI CCGC 1 cut(s) 489
BspANI GGCC 3 cut(s) 5, 488, 591
BspCNI CTCAG 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 4 cut(s) 78, 592, 742, 843
BssMI GATC 2 cut(s) 292, 445
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 7 cut(s) 47, 58, 130, 211, 277, 355, 616
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 565, 573
BstENI CCTNNNNNAGG 1 cut(s) 597
BstF5I GGATG 2 cut(s) 112, 609
BstKTI GATC 2 cut(s) 295, 448
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 292, 445
BstMWI GCNNNNNNNGC 2 cut(s) 485, 569
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 826
BstX2I RGATCY 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 1 cut(s) 445
Bsu36I CCTNAGG 1 cut(s) 565
BsuRI GGCC 3 cut(s) 5, 488, 591
BtsCI GGATG 2 cut(s) 112, 609
BtsIMutI CAGTG 4 cut(s) 52, 85, 585, 850
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 502
CspCI CAANNNNNGTGG 1 cut(s) 826
CviAII CATG 7 cut(s) 94, 463, 475, 520, 532, 775, 809
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 565, 573
DpnI GATC 2 cut(s) 294, 447
DpnII GATC 2 cut(s) 292, 445
DrdI GACNNNNNNGTC 1 cut(s) 523
DseDI GACNNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 565
EcoNI CCTNNNNNAGG 1 cut(s) 597
EcoRII CCWGG 1 cut(s) 424
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 7 cut(s) 97, 466, 478, 523, 535, 778, 812
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 7 cut(s) 93, 462, 474, 519, 531, 774, 808
Fnu4HI GCNGC 2 cut(s) 249, 489
FokI GGATG 2 cut(s) 119, 616
Fsp4HI GCNGC 2 cut(s) 249, 489
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 249, 489
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 3 cut(s) 5, 488, 591
HgaI GACGC 1 cut(s) 407
Hin1II CATG 7 cut(s) 97, 466, 478, 523, 535, 778, 812
HinfI GANTC 5 cut(s) 284, 468, 580, 641, 753
Hpy188I TCNGA 2 cut(s) 305, 441
Hpy188III TCNNGA 6 cut(s) 30, 281, 456, 619, 797, 855
HpyAV CCTTC 2 cut(s) 214, 616
HpyCH4III ACNGT 7 cut(s) 47, 58, 130, 211, 277, 355, 616
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 569
HpyF3I CTNAG 2 cut(s) 565, 573
Hsp92II CATG 7 cut(s) 97, 466, 478, 523, 535, 778, 812
Kzo9I GATC 2 cut(s) 292, 445
LmnI GCTCC 4 cut(s) 25, 569, 669, 709
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 169, 848
MalI GATC 2 cut(s) 294, 447
MboI GATC 2 cut(s) 292, 445
MboII GAAGA 4 cut(s) 198, 318, 558, 826
MflI RGATCY 1 cut(s) 445
MluCI AATT 5 cut(s) 51, 99, 165, 359, 671
MmeI TCCRAC 2 cut(s) 473, 691
MnlI CCTC 7 cut(s) 16, 231, 250, 602, 603, 700, 735
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 3 cut(s) 35, 362, 419
MslI CAYNNNNRTG 1 cut(s) 813
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 485, 569
NdeII GATC 2 cut(s) 292, 445
NlaIII CATG 7 cut(s) 97, 466, 478, 523, 535, 778, 812
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 5 cut(s) 284, 468, 580, 641, 753
PflFI GACNNNGTC 1 cut(s) 830
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 2 cut(s) 250, 490
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 590
PsuI RGATCY 1 cut(s) 445
PsyI GACNNNGTC 1 cut(s) 830
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 813
SaqAI TTAA 3 cut(s) 35, 362, 419
SatI GCNGC 2 cut(s) 249, 489
Sau3AI GATC 2 cut(s) 292, 445
Sau96I GGNCC 1 cut(s) 590
ScrFI CCNGG 1 cut(s) 426
SetI ASST 9 cut(s) 231, 250, 261, 324, 539, 574, 636, 714, 804
SmiMI CAYNNNNRTG 1 cut(s) 813
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
Sse9I AATT 5 cut(s) 51, 99, 165, 359, 671
SsiI CCGC 1 cut(s) 489
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 424
TaaI ACNGT 7 cut(s) 47, 58, 130, 211, 277, 355, 616
TaqI TCGA 1 cut(s) 731
TasI AATT 5 cut(s) 51, 99, 165, 359, 671
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 5 cut(s) 284, 468, 580, 641, 753
Tru1I TTAA 3 cut(s) 35, 362, 419
Tru9I TTAA 3 cut(s) 35, 362, 419
TscAI CASTG 4 cut(s) 52, 85, 592, 850
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 110, 332, 509, 797
TspRI CASTG 4 cut(s) 52, 85, 592, 850
Tth111I GACNNNGTC 1 cut(s) 830
XagI CCTNNNNNAGG 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.