Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001137

Physical Location & Seq

Genomic Coordinates Reverse (-)

15140125 .. 15142450

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATGTTTTGTTGCAGACCAGCACTTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGATCCAACATCAGGAAACATGAGAATCAACATGGCTTTTATGGCCACAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGATTGTGTATGAGAGTCTTAGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTCAGATATATGGAGTGGAGCTTGTTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGAACATGGACATAATGGAAAGAGTTCTTGAGGTTGGAGAATACAATTTGTACACCAAAACGACGTTGGATTTTCTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

174

Amino Acids

19.18

Weight (kDa)

8.74

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	5 - 116	8.5e-17	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61440 AT3G61440 AT3G61440 AT3G61440
fragaria_vesca	FvH4_7g14710
malus_domestica	MD01G1065600.v1.1 MD07G1135000.v1.1
prunus_persica	Prupe.2G172800_v2.0.a1
pyrus_communis	pycom01g09490 pycom07g13220
rosa_chinensis	RchiOBHm_Chr1g0322951 RchiOBHm_Chr1g0327551 RchiOBHm_Chr1g0327561 RchiOBHm_Chr1g0356641 RchiOBHm_Chr2g0170281 RchiOBHm_Chr3g0492881 RchiOBHm_Chr5g0039681 RchiOBHm_Chr5g0054831 RchiOBHm_Chr6g0250541 RchiOBHm_Chr6g0250851 RchiOBHm_Chr7g0210971 RchiOBHm_Chr7g0222251 RchiOBHm_Chr7g0222261
rosa_laevigata	RLG00000001565 RLG00000002082 RLG00000022915 RLG00000028090 RLG00000029440 RLG00000029484 RLG00000032412 RLG00000036876
rosa_multiflora	Rmu_sc0001644.1_g000033 Rmu_sc0009428.1_g000004 Rmu_sc0012929.1_g000002 Rmu_ssc0000270.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025850 Rroxscaffold_1G00026260 Rroxscaffold_1G00032060 Rroxscaffold_3G00237260 Rroxscaffold_4G00299460 Rroxscaffold_4G00322970 Rroxscaffold_5G00365280 Rroxscaffold_7G00156280
rosa_rugosa	Rorug01G0240400 Rorug01G0250300 Rorug05G0288100 Rorug05G0289100.1
rosa_samantha	Rh1BG223300 Rh1BG231800 Rh1CG247600 Rh1DG250200 Rh5CG392800 Rh5DG268500 Rh6CG145900 Rh7BG266300
rosa_wichuraiana	Rw1G023370 Rw6G009010 Rw7G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	129
AfaI	GTAC	2 cut(s)	146, 494
AfiI	CCNNNNNNNGG	2 cut(s)	98, 242
AgsI	TTSAA	4 cut(s)	37, 362, 430, 445
AjnI	CCWGG	2 cut(s)	67, 391
AluBI	AGCT	3 cut(s)	180, 215, 355
AluI	AGCT	3 cut(s)	180, 215, 355
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	131
BauI	CACGAG	1 cut(s)	175
BccI	CCATC	2 cut(s)	145, 241
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	69, 393
Bme1390I	CCNGG	2 cut(s)	69, 393
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	69, 393
BmsI	GCATC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	491
BsaXI	ACNNNNNCTCC	4 cut(s)	220, 243, 250, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 242
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	69, 393
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	2 cut(s)	98, 242
BseMII	CTCAG	2 cut(s)	207, 350
BseNI	ACTGG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	98, 242
BsnI	GGCC	1 cut(s)	131
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	208, 349
BspPI	GGATC	1 cut(s)	83
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	69, 393
Bst4CI	ACNGT	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	208, 216, 336
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	69, 393
BstSCI	CCNGG	2 cut(s)	67, 391
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	395
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	145, 493
CviAII	CATG	4 cut(s)	106, 118, 163, 448
CviJI	RGCY	7 cut(s)	57, 122, 131, 180, 215, 269, 355
CviKI_1	RGCY	7 cut(s)	57, 122, 131, 180, 215, 269, 355
CviQI	GTAC	2 cut(s)	145, 493
DdeI	CTNAG	3 cut(s)	208, 216, 336
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DrdI	GACNNNNNNGTC	1 cut(s)	166
DseDI	GACNNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	67, 391
FaeI	CATG	4 cut(s)	109, 121, 166, 451
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	4 cut(s)	105, 117, 162, 447
FokI	GGATG	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	109, 121, 166, 451
HinfI	GANTC	5 cut(s)	111, 204, 223, 284, 426
Hpy166II	GTNNAC	2 cut(s)	389, 495
Hpy188I	TCNGA	3 cut(s)	84, 339, 519
Hpy188III	TCNNGA	3 cut(s)	99, 262, 470
Hpy8I	GTNNAC	2 cut(s)	389, 495
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	208, 216, 336
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	4 cut(s)	109, 121, 166, 451
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	212, 312, 352
LpnPI	CCDG	8 cut(s)	33, 54, 81, 84, 339, 378, 396, 405
LweI	GCATC	1 cut(s)	31
MabI	ACCWGGT	1 cut(s)	391
MaeII	ACGT	1 cut(s)	506
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	201
MflI	RGATCY	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	314, 487
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	5 cut(s)	116, 334, 403, 457, 489
MnlI	CCTC	4 cut(s)	245, 246, 408, 466
Mox20I	TGGCCA	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	62
Msp20I	TGGCCA	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	69, 393
MvaI	CCWGG	2 cut(s)	69, 393
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	4 cut(s)	109, 121, 166, 451
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	111, 223, 284, 426
PfoI	TCCNGGA	1 cut(s)	67
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	67, 391
PspGI	CCWGG	2 cut(s)	67, 391
PspPI	GGNCC	1 cut(s)	395
PspPPI	RGGWCCY	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	2 cut(s)	146, 494
RsaNI	GTAC	2 cut(s)	145, 493
SaqAI	TTAA	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	69, 393
SetI	ASST	7 cut(s)	182, 217, 279, 357, 397, 477, 509
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	314, 487
StyD4I	CCNGG	2 cut(s)	67, 391
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	1 cut(s)	404
TasI	AATT	2 cut(s)	314, 487
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	4 cut(s)	111, 223, 284, 426
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.