Rw7G029470

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
40885279 .. 40889241
3963 bp
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UTR
Exon/CDS
Intron
Rw7G029470.1

Sequence Viewer

Length: 987 bp
ATGGGGATCCTTCAGAACAAGAAAACCTCCTCCTCTTCTCCTTCTTCAACATCGCCTTGCACCAATCTCAGAGCTGCTTACCACAACTGCTTCAACAGGTGGTATTCGGAGAAGTTTGTAAAGGGTAATTGGGACAAAGAGGAATGCGTTTCGGAGTGGGAGAAATACAAAGCTTGTCTATCTGAACATTTGGAAGATAAACAACTGAGTCGGTTCTTGGAGGCTGAAGGACCTGTGAGCACCACCACTGCAACCAAAGCCCATGGCGGGCGACCAGCACTTGCTATCTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGAGCCAACATCAGGAAACATGGGAATCAGCATGGCTTTTATGGCTGCAGTGAAAGGGTACAAGATGGTTTTGACCATGCCATCTTACACGAGCTTGGAGAGAAGAATGTGTATAAGAGCCTTCGGAGCTGAGTTGATTCTCACTGACCCTCCAAAGGGGACGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAAGACTCGGGTACATTCTGAAACTGCAGGACCTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTAATGGGAATTGGTAGCAGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAATATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGTATCAACCTTTTGCAGAGACACGAATAAAAATTGTACTTGAAGAGGCACGTGACTGGAAGCTTTCCACTCCTTGCAAGCCAATACCACAGCTGTCTAGAAAAATTGCTAAACCTGCATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

328

Amino Acids

35.98

Weight (kDa)

8.7

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0203 PF05254 15 - 75 1.9e-22 Uncharacterised protein family (UPF0203)
PALP PF00291 86 - 288 3.7e-42 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 680
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 246
AcvI CACGTG 1 cut(s) 917
AfaI GTAC 3 cut(s) 401, 597, 903
AfiI CCNNNNNNNGG 6 cut(s) 267, 353, 496, 497, 591, 690
AgsI TTSAA 5 cut(s) 48, 94, 292, 823, 908
AjnI CCWGG 2 cut(s) 322, 784
AluBI AGCT 6 cut(s) 74, 173, 435, 470, 928, 958
AluI AGCT 6 cut(s) 74, 173, 435, 470, 928, 958
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 878
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 74, 386
Asp700I GAANNNNTTC 1 cut(s) 858
AspS9I GGNCC 3 cut(s) 230, 614, 788
AvaI CYCGRG 1 cut(s) 591
AvaII GGWCC 3 cut(s) 230, 614, 788
BamHI GGATCC 1 cut(s) 6
BanI GGYRCC 1 cut(s) 680
BauI CACGAG 1 cut(s) 430
BbrPI CACGTG 1 cut(s) 917
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 61, 373
BccI CCATC 3 cut(s) 400, 430, 692
BciT130I CCWGG 2 cut(s) 324, 786
BciVI GTATCC 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 878
BfaI CTAG 1 cut(s) 963
BfmI CTRYAG 2 cut(s) 387, 609
BfuI GTATCC 1 cut(s) 625
BisI GCNGC 2 cut(s) 75, 387
BlsI GCNGC 2 cut(s) 76, 388
Bme1390I CCNGG 2 cut(s) 324, 786
Bme18I GGWCC 3 cut(s) 230, 614, 788
BmeT110I CYCGRG 1 cut(s) 591
BmgT120I GGNCC 3 cut(s) 230, 614, 788
BmiI GGNNCC 3 cut(s) 8, 682, 747
BmrFI CCNGG 2 cut(s) 324, 786
BmsI GCATC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 884
BsaAI YACGTR 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 4 cut(s) 475, 498, 505, 528
Bsc4I CCNNNNNNNGG 6 cut(s) 267, 353, 496, 497, 591, 690
Bse1I ACTGG 2 cut(s) 808, 926
BseBI CCWGG 2 cut(s) 324, 786
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 6 cut(s) 267, 353, 496, 497, 591, 690
BseMII CTCAG 4 cut(s) 82, 197, 462, 609
BseNI ACTGG 2 cut(s) 808, 926
BseRI GAGGAG 2 cut(s) 19, 22
BseXI GCAGC 2 cut(s) 61, 373
BshNI GGYRCC 1 cut(s) 680
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 591
BslFI GGGAC 2 cut(s) 146, 514
BslI CCNNNNNNNGG 6 cut(s) 267, 353, 496, 497, 591, 690
BsmAI GTCTC 1 cut(s) 878
BsmFI GGGAC 2 cut(s) 146, 514
BsmI GAATGC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 262
BspACI CCGC 1 cut(s) 267
BspCNI CTCAG 4 cut(s) 81, 198, 463, 610
BspLI GGNNCC 3 cut(s) 8, 682, 747
BspMAI CTGCAG 2 cut(s) 391, 613
BspPI GGATC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 680
BsrI ACTGG 2 cut(s) 808, 926
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 430
Bst2UI CCWGG 2 cut(s) 324, 786
Bst4CI ACNGT 2 cut(s) 514, 702
Bst6I CTCTTC 2 cut(s) 40, 903
BstBAI YACGTR 1 cut(s) 917
BstC8I GCNNGC 3 cut(s) 269, 750, 944
BstDEI CTNAG 4 cut(s) 68, 206, 471, 618
BstDSI CCRYGG 1 cut(s) 262
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 878
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 4 cut(s) 257, 383, 467, 980
BstNI CCWGG 2 cut(s) 324, 786
BstSCI CCNGG 2 cut(s) 322, 784
BstSFI CTRYAG 2 cut(s) 387, 609
BstV1I GCAGC 2 cut(s) 61, 373
BstX2I RGATCY 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 1 cut(s) 6
BsuI GTATCC 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 36
BtsI GCAGTG 2 cut(s) 246, 396
BtsIMutI CAGTG 3 cut(s) 246, 396, 483
Cac8I GCNNGC 3 cut(s) 269, 750, 944
CaiI CAGNNNCTG 1 cut(s) 617
Cfr13I GGNCC 3 cut(s) 230, 614, 788
CsiI ACCWGGT 1 cut(s) 784
Csp6I GTAC 3 cut(s) 400, 596, 902
CviAII CATG 6 cut(s) 263, 361, 373, 418, 841, 984
CviQI GTAC 3 cut(s) 400, 596, 902
DdeI CTNAG 4 cut(s) 68, 206, 471, 618
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 40, 903
EarI CTCTTC 2 cut(s) 40, 903
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 230, 614, 788
Eco57I CTGAAG 1 cut(s) 246
Eco72I CACGTG 1 cut(s) 917
Eco88I CYCGRG 1 cut(s) 591
EcoO109I RGGNCCY 3 cut(s) 230, 614, 788
EcoRII CCWGG 2 cut(s) 322, 784
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 6 cut(s) 266, 364, 376, 421, 844, 987
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 2 cut(s) 146, 514
FatI CATG 6 cut(s) 262, 360, 372, 417, 840, 983
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 75, 387
Fsp4HI GCNGC 2 cut(s) 75, 387
FspBI CTAG 1 cut(s) 963
GluI GCNGC 2 cut(s) 75, 387
GsuI CTGGAG 1 cut(s) 345
Hin1II CATG 6 cut(s) 266, 364, 376, 421, 844, 987
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 2 cut(s) 171, 926
HinfI GANTC 6 cut(s) 208, 366, 478, 539, 589, 819
Hpy166II GTNNAC 2 cut(s) 649, 782
Hpy188I TCNGA 8 cut(s) 15, 71, 109, 154, 184, 339, 467, 604
Hpy188III TCNNGA 4 cut(s) 354, 517, 863, 963
Hpy8I GTNNAC 2 cut(s) 649, 782
HpyAV CCTTC 5 cut(s) 20, 51, 221, 472, 514
HpyCH4III ACNGT 2 cut(s) 514, 702
HpyCH4IV ACGT 1 cut(s) 916
HpyCH4V TGCA 7 cut(s) 60, 251, 389, 611, 881, 942, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 383, 467, 980
HpyF3I CTNAG 4 cut(s) 68, 206, 471, 618
HpySE526I ACGT 1 cut(s) 916
Hsp92II CATG 6 cut(s) 266, 364, 376, 421, 844, 987
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 3 cut(s) 467, 567, 745
Lsp1109I GCAGC 2 cut(s) 61, 373
LweI GCATC 1 cut(s) 286
MabI ACCWGGT 1 cut(s) 784
MaeI CTAG 1 cut(s) 963
MaeII ACGT 1 cut(s) 916
MaeIII GTNAC 1 cut(s) 917
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 6 cut(s) 27, 36, 206, 280, 456, 920
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 5 cut(s) 127, 569, 666, 897, 969
MlyI GAGTC 2 cut(s) 217, 583
MmeI TCCRAC 3 cut(s) 589, 676, 796
MroXI GAANNNNTTC 1 cut(s) 858
MseI TTAA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 958
MspR9I CCNGG 2 cut(s) 324, 786
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 2 cut(s) 324, 786
MwoI GCNNNNNNNGC 4 cut(s) 257, 383, 467, 980
NcoI CCATGG 1 cut(s) 262
NdeII GATC 1 cut(s) 6
NlaIII CATG 6 cut(s) 266, 364, 376, 421, 844, 987
NlaIV GGNNCC 3 cut(s) 8, 682, 747
NmuCI GTSAC 1 cut(s) 917
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 858
PfeI GAWTC 4 cut(s) 366, 478, 539, 819
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 2 cut(s) 76, 388
PleI GAGTC 2 cut(s) 216, 583
PmaCI CACGTG 1 cut(s) 917
PmlI CACGTG 1 cut(s) 917
PpsI GAGTC 2 cut(s) 216, 583
Ppu21I YACGTR 1 cut(s) 917
PpuMI RGGWCCY 3 cut(s) 230, 614, 788
Psp5II RGGWCCY 3 cut(s) 230, 614, 788
Psp6I CCWGG 2 cut(s) 322, 784
PspCI CACGTG 1 cut(s) 917
PspGI CCWGG 2 cut(s) 322, 784
PspN4I GGNNCC 3 cut(s) 8, 682, 747
PspPI GGNCC 3 cut(s) 230, 614, 788
PspPPI RGGWCCY 3 cut(s) 230, 614, 788
PstI CTGCAG 2 cut(s) 391, 613
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 958
RsaI GTAC 3 cut(s) 401, 597, 903
RsaNI GTAC 3 cut(s) 400, 596, 902
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 75, 387
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 3 cut(s) 230, 614, 788
SchI GAGTC 2 cut(s) 217, 583
ScrFI CCNGG 2 cut(s) 324, 786
SduI GDGCHC 1 cut(s) 242
SexAI ACCWGGT 1 cut(s) 784
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 2 cut(s) 387, 609
SinI GGWCC 3 cut(s) 230, 614, 788
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
Sse9I AATT 5 cut(s) 127, 569, 666, 897, 969
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 963
StyD4I CCNGG 2 cut(s) 322, 784
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 514, 702
TaiI ACGT 1 cut(s) 919
TaqI TCGA 1 cut(s) 797
TasI AATT 5 cut(s) 127, 569, 666, 897, 969
TatI WGTACW 1 cut(s) 901
TfiI GAWTC 4 cut(s) 366, 478, 539, 819
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 3 cut(s) 253, 396, 490
TseFI GTSAC 1 cut(s) 917
TseI GCWGC 2 cut(s) 74, 386
Tsp45I GTSAC 1 cut(s) 917
TspRI CASTG 3 cut(s) 253, 396, 490
VpaK11BI GGWCC 3 cut(s) 230, 614, 788
XbaI TCTAGA 1 cut(s) 962
XmnI GAANNNNTTC 1 cut(s) 858
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.