RLG00000028090

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001137
Physical Location & Seq
Reverse (-)
18536165 .. 18539563
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028090

Sequence Viewer

Length: 1128 bp
ATGGCGTCTTTGACGAGCTTTCTGAAGAAGAGATCCACTCTTTCTGTGTGCAATGAAGCCCTGAGAATGAAGAGACTCTTCTCCACTGCACAACCCATCGCTGCTGATTCTTATTCTTTTGTTGAAAGGATCAGAAATCTCCCTAAAGCTCTTCCTGGAACCCACATCAAAACTGAAGTCTCCCAACTTATTGGTAGAACACCCCTCGTATACCTGAACAAAGTCACTGAAGGCTGTGGAGCTTATATTGCTGTCAAGCAAGAGATGTTTCAGCCCACCGCCAGCATCAAAGACAGACCTGCACTTGCTATGTTCAGTGATGCTGAAAAGAAAGGCTTGATAACTCCTGGAGTGACAACTCTGATAGAGCCAACATCAGGAAACATGGGAATCAGCATGGCCTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACAAGCTTGGAGAGAAGAGTGTGTATGAGAGCCTTTGGAGCTGAGTTGATTCTCACTGACCCTACAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAATCCTGCCAATACTCAGGTACATTTTGAAACTACAGGACCTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTCATGGGAATTGGTAGCGGAGGCACTGTCTCAGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAAGATATATGGAGTTGAGCCTGCTGAAAGTAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCGATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGTTAGAAGTGAAGATGCAGTAAATATGGCAAGGCAATTGGCACTGAAAGAAGGACTTTTGGTAGGGATATCATCTGGAGCCAACACAGTGGCAGCCCTTGAGCTCGCAAAAAAGCCAGAAAACAAAGGCAAACTTATAGTGACAATTCATGCAAGTTTCGGGGAGCGATACTTGTCGTCTGTCCTATTTGAAGAGCTAAGGAAGGAAGCTGAAAACATGCAGCCAGTCTCAGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

376

Amino Acids

40.61

Weight (kDa)

8.2

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 60 - 346 1.5e-73 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 445, 680
Acc36I ACCTGC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 210
AciI CCGC 3 cut(s) 279, 411, 699
AclWI GGATC 2 cut(s) 27, 137
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 3 cut(s) 44, 195, 249
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 425, 621
AfiI CCNNNNNNNGG 2 cut(s) 377, 521
AgsI TTSAA 4 cut(s) 125, 629, 844, 1079
AjnI CCWGG 3 cut(s) 154, 346, 805
AluBI AGCT 8 cut(s) 18, 149, 242, 459, 494, 991, 1084, 1097
AluI AGCT 8 cut(s) 18, 149, 242, 459, 494, 991, 1084, 1097
Alw21I GWGCWC 1 cut(s) 993
Alw26I GTCTC 4 cut(s) 67, 184, 715, 1120
AlwI GGATC 2 cut(s) 27, 137
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 2 cut(s) 399, 408
ApeKI GCWGC 3 cut(s) 101, 980, 1108
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
Asp700I GAANNNNTTC 1 cut(s) 879
AspS9I GGNCC 2 cut(s) 638, 809
AvaII GGWCC 2 cut(s) 638, 809
BanII GRGCYC 1 cut(s) 993
Bbv12I GWGCWC 1 cut(s) 993
BbvI GCAGC 3 cut(s) 88, 992, 1120
BccI CCATC 3 cut(s) 104, 424, 520
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 3 cut(s) 156, 348, 807
BciVI GTATCC 1 cut(s) 649
BcoDI GTCTC 4 cut(s) 67, 184, 715, 1120
BfmI CTRYAG 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 649
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 4 cut(s) 102, 411, 981, 1109
BlsI GCNGC 4 cut(s) 103, 412, 982, 1110
Bme1390I CCNGG 3 cut(s) 156, 348, 807
Bme18I GGWCC 2 cut(s) 638, 809
BmgT120I GGNCC 2 cut(s) 638, 809
BmiI GGNNCC 2 cut(s) 160, 967
BmrFI CCNGG 3 cut(s) 156, 348, 807
BmsI GCATC 3 cut(s) 294, 310, 892
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpmI CTGGAG 2 cut(s) 369, 984
Bpu10I CCTNAGC 1 cut(s) 1085
BpuEI CTTGAG 2 cut(s) 905, 1007
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 4 cut(s) 522, 552, 693, 723
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 521
Bse1I ACTGG 2 cut(s) 829, 1112
Bse3DI GCAATG 2 cut(s) 58, 420
BseBI CCWGG 3 cut(s) 156, 348, 807
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 377, 521
BseMI GCAATG 2 cut(s) 58, 420
BseMII CTCAG 5 cut(s) 53, 486, 629, 633, 726
BseNI ACTGG 2 cut(s) 829, 1112
BseXI GCAGC 3 cut(s) 88, 992, 1120
BsgI GTGCAG 2 cut(s) 72, 285
BshFI GGCC 2 cut(s) 401, 410
BsiHKAI GWGCWC 1 cut(s) 993
BslI CCNNNNNNNGG 2 cut(s) 377, 521
BsmAI GTCTC 4 cut(s) 67, 184, 715, 1120
BsnI GGCC 2 cut(s) 401, 410
Bsp1286I GDGCHC 1 cut(s) 993
Bsp143I GATC 2 cut(s) 32, 129
BspACI CCGC 3 cut(s) 279, 411, 699
BspANI GGCC 2 cut(s) 401, 410
BspCNI CTCAG 5 cut(s) 54, 487, 628, 634, 725
BspLI GGNNCC 2 cut(s) 160, 967
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 2 cut(s) 27, 137
BspQI GCTCTTC 2 cut(s) 156, 1074
BsrDI GCAATG 2 cut(s) 58, 420
BsrI ACTGG 2 cut(s) 829, 1112
BssMI GATC 2 cut(s) 32, 129
BssNAI GTATAC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 211
Bst2UI CCWGG 3 cut(s) 156, 348, 807
Bst4CI ACNGT 4 cut(s) 538, 709, 726, 976
Bst6I CTCTTC 6 cut(s) 23, 65, 83, 156, 463, 1074
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 283, 774, 993
BstDEI CTNAG 7 cut(s) 62, 495, 615, 642, 712, 1085, 1117
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 531
BstKTI GATC 2 cut(s) 35, 132
BstMAI GTCTC 4 cut(s) 67, 184, 715, 1120
BstMBI GATC 2 cut(s) 32, 129
BstMWI GCNNNNNNNGC 3 cut(s) 248, 407, 491
BstNI CCWGG 3 cut(s) 156, 348, 807
BstNSI RCATGY 1 cut(s) 1108
BstSCI CCNGG 3 cut(s) 154, 346, 805
BstSFI CTRYAG 1 cut(s) 633
BstV1I GCAGC 3 cut(s) 88, 992, 1120
BstX2I RGATCY 1 cut(s) 32
BstXI CCANNNNNNTGG 2 cut(s) 191, 976
BstYI RGATCY 1 cut(s) 32
BstZ17I GTATAC 1 cut(s) 211
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 2 cut(s) 401, 410
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 531
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 7 cut(s) 84, 225, 322, 507, 705, 929, 981
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 283, 774, 993
CaiI CAGNNNCTG 1 cut(s) 641
Cfr13I GGNCC 2 cut(s) 638, 809
CsiI ACCWGGT 1 cut(s) 805
Csp6I GTAC 2 cut(s) 424, 620
CviAII CATG 7 cut(s) 385, 397, 442, 685, 862, 1037, 1105
CviQI GTAC 2 cut(s) 424, 620
DdeI CTNAG 7 cut(s) 62, 495, 615, 642, 712, 1085, 1117
DpnI GATC 2 cut(s) 34, 131
DpnII GATC 2 cut(s) 32, 129
DrdI GACNNNNNNGTC 2 cut(s) 445, 680
DseDI GACNNNNNNGTC 2 cut(s) 445, 680
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 6 cut(s) 23, 65, 83, 156, 463, 1074
EarI CTCTTC 6 cut(s) 23, 65, 83, 156, 463, 1074
Ecl136II GAGCTC 1 cut(s) 991
Eco24I GRGCYC 1 cut(s) 993
Eco32I GATATC 1 cut(s) 957
Eco47I GGWCC 2 cut(s) 638, 809
Eco53kI GAGCTC 1 cut(s) 991
Eco57I CTGAAG 3 cut(s) 44, 195, 249
EcoICRI GAGCTC 1 cut(s) 991
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoO109I RGGNCCY 2 cut(s) 638, 809
EcoRII CCWGG 3 cut(s) 154, 346, 805
EcoRV GATATC 1 cut(s) 957
EcoT38I GRGCYC 1 cut(s) 993
FaeI CATG 7 cut(s) 388, 400, 445, 688, 865, 1040, 1108
FalI AAGNNNNNCTT 8 cut(s) 62, 94, 320, 352, 927, 959, 1005, 1037
FatI CATG 7 cut(s) 384, 396, 441, 684, 861, 1036, 1104
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 4 cut(s) 102, 411, 981, 1109
FokI GGATG 1 cut(s) 538
FriOI GRGCYC 1 cut(s) 993
Fsp4HI GCNGC 4 cut(s) 102, 411, 981, 1109
GluI GCNGC 4 cut(s) 102, 411, 981, 1109
GsuI CTGGAG 2 cut(s) 369, 984
HaeIII GGCC 2 cut(s) 401, 410
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 388, 400, 445, 688, 865, 1040, 1108
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 6 cut(s) 75, 107, 390, 502, 563, 840
Hpy166II GTNNAC 3 cut(s) 211, 673, 803
Hpy188I TCNGA 3 cut(s) 24, 134, 363
Hpy188III TCNNGA 4 cut(s) 378, 541, 884, 963
Hpy8I GTNNAC 3 cut(s) 211, 673, 803
HpyAV CCTTC 4 cut(s) 224, 538, 932, 1084
HpyCH4III ACNGT 4 cut(s) 538, 709, 726, 976
HpyCH4V TGCA 6 cut(s) 51, 89, 302, 905, 1040, 1108
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 407, 491
HpyF3I CTNAG 7 cut(s) 62, 495, 615, 642, 712, 1085, 1117
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 388, 400, 445, 688, 865, 1040, 1108
Kzo9I GATC 2 cut(s) 32, 129
LguI GCTCTTC 2 cut(s) 156, 1074
LmnI GCTCC 5 cut(s) 239, 491, 591, 965, 1051
Lsp1109I GCAGC 3 cut(s) 88, 992, 1120
LweI GCATC 3 cut(s) 294, 310, 892
MabI ACCWGGT 1 cut(s) 805
MaeIII GTNAC 3 cut(s) 223, 352, 1027
MalI GATC 2 cut(s) 34, 131
MboI GATC 2 cut(s) 32, 129
MboII GAAGA 8 cut(s) 37, 40, 70, 82, 143, 480, 911, 1091
MfeI CAATTG 1 cut(s) 923
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 993
MluCI AATT 4 cut(s) 593, 690, 923, 1032
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 3 cut(s) 613, 700, 817
MnlI CCTC 6 cut(s) 215, 524, 646, 695, 822, 880
MroXI GAANNNNTTC 1 cut(s) 879
MseI TTAA 1 cut(s) 1126
MspR9I CCNGG 3 cut(s) 156, 348, 807
MunI CAATTG 1 cut(s) 923
MvaI CCWGG 3 cut(s) 156, 348, 807
MwoI GCNNNNNNNGC 3 cut(s) 248, 407, 491
NdeII GATC 2 cut(s) 32, 129
NlaIII CATG 7 cut(s) 388, 400, 445, 688, 865, 1040, 1108
NlaIV GGNNCC 2 cut(s) 160, 967
NmuCI GTSAC 3 cut(s) 223, 352, 1027
NspI RCATGY 1 cut(s) 1108
PciSI GCTCTTC 2 cut(s) 156, 1074
PdmI GAANNNNTTC 1 cut(s) 879
PfeI GAWTC 5 cut(s) 107, 390, 502, 563, 840
PfoI TCCNGGA 2 cut(s) 154, 346
PkrI GCNGC 4 cut(s) 103, 412, 982, 1110
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PpuMI RGGWCCY 2 cut(s) 638, 809
Psp124BI GAGCTC 1 cut(s) 993
Psp5II RGGWCCY 2 cut(s) 638, 809
Psp6I CCWGG 3 cut(s) 154, 346, 805
PspGI CCWGG 3 cut(s) 154, 346, 805
PspN4I GGNNCC 2 cut(s) 160, 967
PspPI GGNCC 2 cut(s) 638, 809
PspPPI RGGWCCY 2 cut(s) 638, 809
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 2 cut(s) 425, 621
RsaNI GTAC 2 cut(s) 424, 620
SacI GAGCTC 1 cut(s) 993
SapI GCTCTTC 2 cut(s) 156, 1074
SaqAI TTAA 1 cut(s) 1126
SatI GCNGC 4 cut(s) 102, 411, 981, 1109
Sau3AI GATC 2 cut(s) 32, 129
Sau96I GGNCC 2 cut(s) 638, 809
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 3 cut(s) 156, 348, 807
SduI GDGCHC 1 cut(s) 993
SexAI ACCWGGT 1 cut(s) 805
SfaNI GCATC 3 cut(s) 294, 310, 892
SfcI CTRYAG 1 cut(s) 633
SfiI GGCCNNNNNGGCC 1 cut(s) 407
SinI GGWCC 2 cut(s) 638, 809
SmlI CTYRAG 2 cut(s) 884, 986
SmoI CTYRAG 2 cut(s) 884, 986
Sse9I AATT 4 cut(s) 593, 690, 923, 1032
SsiI CCGC 3 cut(s) 279, 411, 699
SstI GAGCTC 1 cut(s) 993
StyD4I CCNGG 3 cut(s) 154, 346, 805
TaaI ACNGT 4 cut(s) 538, 709, 726, 976
TaqI TCGA 1 cut(s) 818
TasI AATT 4 cut(s) 593, 690, 923, 1032
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 5 cut(s) 107, 390, 502, 563, 840
Tru1I TTAA 1 cut(s) 1126
Tru9I TTAA 1 cut(s) 1126
TscAI CASTG 7 cut(s) 91, 232, 322, 514, 712, 936, 981
TseFI GTSAC 3 cut(s) 223, 352, 1027
TseI GCWGC 3 cut(s) 101, 980, 1108
Tsp45I GTSAC 3 cut(s) 223, 352, 1027
TspDTI ATGAA 4 cut(s) 69, 83, 431, 1025
TspRI CASTG 7 cut(s) 91, 232, 322, 514, 712, 936, 981
VpaK11BI GGWCC 2 cut(s) 638, 809
XagI CCTNNNNNAGG 1 cut(s) 519
XceI RCATGY 1 cut(s) 1108
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.