Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001137

Physical Location & Seq

Genomic Coordinates Reverse (-)

35862378 .. 35864430

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCTGTCACTCTTCACACAAATCTCGGGGATATTAAGTGCGAGGTCTTCTGCGACGAGGTCCCTAAAACCGCCGAGAATTTCTTGGCGCTATGTGCGAGCGGTTATTATGATGGGACTATATTTCATAGGAATATTAAGGGTTTCATGATACAAGGTGGAGATCCCACTGGTACGGGCAAGGGAGGGACTAGCATTTGGGGCAAGAAGTTCAATGATGAGATAAGAGAGTCTCTCAAGCACAATGCAAGGGGAATAATGTCAATGGCAAATAGCGGTCCCAATACAAATGGAAGCCAGTTCTTCATTAGCTATGCAAAGCAGCCACATCTCAATGGATTGTACACTGTGTTTGGCAAAGTGATTCATGGGTTTGAGGTTCTTGATATCATGGAAAAGACTCAAACTGGAGCAGGGGATCGCCCTCTTGCAGAGATCAGGCTTAATCGAGTGACTATACATGCTAATCCTCTTGCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

160

Amino Acids

17.44

Weight (kDa)

7.77

Isoelectric Point (pI)

18.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	3 - 152	3.1e-54	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61440 AT3G61440 AT3G61440 AT3G61440
fragaria_vesca	FvH4_7g14710
malus_domestica	MD01G1065600.v1.1 MD07G1135000.v1.1
prunus_persica	Prupe.2G172800_v2.0.a1
pyrus_communis	pycom01g09490 pycom07g13220
rosa_chinensis	RchiOBHm_Chr1g0322951 RchiOBHm_Chr1g0327551 RchiOBHm_Chr1g0327561 RchiOBHm_Chr1g0356641 RchiOBHm_Chr2g0170281 RchiOBHm_Chr3g0492881 RchiOBHm_Chr5g0039681 RchiOBHm_Chr5g0054831 RchiOBHm_Chr6g0250541 RchiOBHm_Chr6g0250851 RchiOBHm_Chr7g0210971 RchiOBHm_Chr7g0222251 RchiOBHm_Chr7g0222261
rosa_laevigata	RLG00000001565 RLG00000002082 RLG00000022915 RLG00000028090 RLG00000029440 RLG00000029484 RLG00000032412 RLG00000036876
rosa_multiflora	Rmu_sc0001644.1_g000033 Rmu_sc0009428.1_g000004 Rmu_sc0012929.1_g000002 Rmu_ssc0000270.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025850 Rroxscaffold_1G00026260 Rroxscaffold_1G00032060 Rroxscaffold_3G00237260 Rroxscaffold_4G00299460 Rroxscaffold_4G00322970 Rroxscaffold_5G00365280 Rroxscaffold_7G00156280
rosa_rugosa	Rorug01G0240400 Rorug01G0250300 Rorug05G0288100 Rorug05G0289100.1
rosa_samantha	Rh1BG223300 Rh1BG231800 Rh1CG247600 Rh1DG250200 Rh5CG392800 Rh5DG268500 Rh6CG145900 Rh7BG266300
rosa_wichuraiana	Rw1G023370 Rw6G009010 Rw7G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	102
AciI	CCGC	3 cut(s)	72, 102, 276
AclWI	GGATC	2 cut(s)	158, 426
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	2 cut(s)	175, 344
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	158, 426
Ama87I	CYCGRG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	61, 278
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	61, 278
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme18I	GGWCC	2 cut(s)	61, 278
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	61, 278
BmiI	GGNNCC	2 cut(s)	63, 280
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpmI	CTGGAG	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	3 cut(s)	175, 298, 412
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseNI	ACTGG	3 cut(s)	175, 298, 412
BseXI	GCAGC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	26
BslFI	GGGAC	4 cut(s)	47, 130, 202, 264
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	4 cut(s)	47, 130, 202, 264
BsoBI	CYCGRG	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	163, 418, 435
BspACI	CCGC	3 cut(s)	72, 102, 276
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	63, 280
BspPI	GGATC	2 cut(s)	158, 426
BsrBI	CCGCTC	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	175, 298, 412
BssMI	GATC	3 cut(s)	163, 418, 435
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	166, 421, 438
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	3 cut(s)	163, 418, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 201
BstNSI	RCATGY	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	168, 345
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	61, 278
Csp6I	GTAC	2 cut(s)	174, 343
CviAII	CATG	4 cut(s)	148, 368, 391, 461
CviJI	RGCY	4 cut(s)	297, 312, 325, 442
CviKI_1	RGCY	4 cut(s)	297, 312, 325, 442
CviQI	GTAC	2 cut(s)	174, 343
DpnI	GATC	3 cut(s)	165, 420, 437
DpnII	GATC	3 cut(s)	163, 418, 435
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	61, 278
Eco88I	CYCGRG	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	388
FaeI	CATG	4 cut(s)	151, 371, 394, 464
FaqI	GGGAC	4 cut(s)	47, 130, 202, 264
FatI	CATG	4 cut(s)	147, 367, 390, 460
Fnu4HI	GCNGC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	151, 371, 394, 464
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	3 cut(s)	230, 364, 400
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188III	TCNNGA	2 cut(s)	148, 383
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	248, 317, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 201
Hsp92II	CATG	4 cut(s)	151, 371, 394, 464
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	163, 418, 435
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	6 cut(s)	156, 311, 393, 399, 424, 462
Lsp1109I	GCAGC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	7, 451
MalI	GATC	3 cut(s)	165, 420, 437
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	3 cut(s)	163, 418, 435
MboII	GAAGA	3 cut(s)	5, 40, 295
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	239, 394
MnlI	CCTC	6 cut(s)	37, 52, 179, 370, 435, 480
MseI	TTAA	3 cut(s)	36, 138, 444
MslI	CAYNNNNRTG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	95, 201
NdeII	GATC	3 cut(s)	163, 418, 435
NlaIII	CATG	4 cut(s)	151, 371, 394, 464
NlaIV	GGNNCC	2 cut(s)	63, 280
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	7, 451
NspI	RCATGY	1 cut(s)	464
PagI	TCATGA	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	364
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	2 cut(s)	238, 394
PpsI	GAGTC	2 cut(s)	238, 394
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	63, 280
PspPI	GGNCC	2 cut(s)	61, 278
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	175, 344
RsaNI	GTAC	2 cut(s)	174, 343
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	36, 138, 444
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	3 cut(s)	163, 418, 435
Sau96I	GGNCC	2 cut(s)	61, 278
SchI	GAGTC	2 cut(s)	239, 394
SetI	ASST	5 cut(s)	48, 63, 160, 314, 381
SinI	GGWCC	2 cut(s)	61, 278
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	3 cut(s)	72, 102, 276
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	448
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	36, 138, 444
Tru9I	TTAA	3 cut(s)	36, 138, 444
TscAI	CASTG	2 cut(s)	175, 352
TseFI	GTSAC	2 cut(s)	7, 451
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	2 cut(s)	7, 451
TspDTI	ATGAA	4 cut(s)	116, 136, 295, 356
TspRI	CASTG	2 cut(s)	175, 352
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	61, 278
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.