RLG00000029484

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
39373523 .. 39380748
7226 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029484

Sequence Viewer

Length: 1329 bp
ATGAATGAAACCAATGCAATTACAAGAATAACAGTGACTGATTCTGCCTCAGAGCGCCTTACATGGGATGATGGTGGCCTACAATGGAAGGAAGACTTCTCTGCACCGAAGTCCCGGTGTGATAGGTATGGACAGTGTGGTGCCAACAGCAGATGTAGCCCTGACAATGTTAATCTGTTTGAATGTGAGTGCCTACAAGGGTATGTGCCTAATTCTATAAGTTATTGGAATCAGAAAAATGGTTCTGGTGGATGTGTGAGTAATCGACTTGGTTTGTTGAAGTGTGGAGATGGAGATGGGTTTATAAAGGTGGCAAGAGTTAAATATCCAGACACAACGATAGCAGCATCGTTAAAATCAGGTACAAGTGACAAAGAGTGCGCGCAGGAGTGCCTAAGAAATTGTTCTTGCACTGCATATTTGAGCACTAAAAATGAAGGGATTGTTGATTTCTTGATATGGTACGATGACTTGATGGACATTTTAGTGTACACAGAGCTTGGACAAGATCTCCACATTCGTGTGAATGCAATCGTGTTAGGAAACAAAGGAAATACAGTTTTGGAGAAGGAAAACCTAGAAGCGAGGGATTTAGCCGCAAGGGAGGTTTTGCTTGCTATTACTGTTCCTGATTCAAGTGATCTATCTGTCAGAAGATTTGTGTTTCAGGTGTATCTCTTATTTCTTGTTCATTCTACAACTGTAAAATTAAGATTGAGAAAACCAGCACTTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGATCCAACATCAGGAAACATGAGAATCAACATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGATTGTGCATGAGAGCCTTAGGAGCTGAGAACTGTCAAGAAGGTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTCAGGTACATTTTGAAACTACAGGACCAGAGATATGGGAGGATACTAATGGAAAAATATATGGAGAGGAGCTTGTTGAAAGTAATAATATACTAAATGGTGGTAAACCCGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGAGACTGATGCACCAGCTGTTGCAGAGACTGATGCACCACCTAAATCTGCCTTCACCAAACATGATCAACAGTATGAGATATCAGTGTTTTTTGGGTTTCATTTGTTGATCATGCCAACTGCTATGGGTTATTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

48.94

Weight (kDa)

5.09

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 3 - 71 1.7e-12 S-locus glycoprotein domain
PAN_2 PF08276 95 - 161 8.1e-16 PAN-like domain
PALP PF00291 243 - 354 4.7e-16 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AasI GACNNNNNNGTC 1 cut(s) 871
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 1 cut(s) 383
AciI CCGC 2 cut(s) 597, 837
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 1 cut(s) 834
AfaI GTAC 5 cut(s) 364, 464, 491, 851, 1011
AfiI CCNNNNNNNGG 2 cut(s) 64, 803
AgsI TTSAA 7 cut(s) 182, 280, 636, 742, 1019, 1082, 1150
AjnI CCWGG 1 cut(s) 772
AleI CACNNNNGTG 1 cut(s) 519
AluBI AGCT 5 cut(s) 499, 885, 920, 1075, 1211
AluI AGCT 5 cut(s) 499, 885, 920, 1075, 1211
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 1190, 1214
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 2 cut(s) 38, 1223
AoxI GGCC 2 cut(s) 76, 834
ApeKI GCWGC 1 cut(s) 344
Asp700I GAANNNNTTC 2 cut(s) 403, 1185
AspLEI GCGC 3 cut(s) 57, 383, 385
AspS9I GGNCC 2 cut(s) 1028, 1115
AsuC2I CCSGG 2 cut(s) 115, 1113
AsuHPI GGTGA 1 cut(s) 1240
AvaII GGWCC 2 cut(s) 1028, 1115
AxyI CCTNAGG 1 cut(s) 913
BanI GGYRCC 1 cut(s) 140
BauI CACGAG 1 cut(s) 880
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 356
BccI CCATC 5 cut(s) 65, 284, 290, 469, 850
BceAI ACGGC 1 cut(s) 856
BciT130I CCWGG 1 cut(s) 774
BciVI GTATCC 1 cut(s) 1039
BclI TGATCA 2 cut(s) 1258, 1302
BcnI CCSGG 2 cut(s) 115, 1113
BcoDI GTCTC 2 cut(s) 1190, 1214
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 1023
BfoI RGCGCY 1 cut(s) 58
BfuI GTATCC 1 cut(s) 1039
BglII AGATCT 1 cut(s) 508
BisI GCNGC 3 cut(s) 345, 597, 837
BlsI GCNGC 3 cut(s) 346, 598, 838
Bme1390I CCNGG 3 cut(s) 115, 774, 1113
Bme18I GGWCC 2 cut(s) 1028, 1115
BmgT120I GGNCC 2 cut(s) 1028, 1115
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 3 cut(s) 115, 774, 1113
BmsI GCATC 4 cut(s) 356, 736, 1192, 1216
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 1211
BpuMI CCSGG 2 cut(s) 115, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 803
Bse1I ACTGG 1 cut(s) 1135
Bse21I CCTNAGG 1 cut(s) 913
Bse3DI GCAATG 1 cut(s) 846
BseBI CCWGG 1 cut(s) 774
BseGI GGATG 2 cut(s) 73, 257
BseLI CCNNNNNNNGG 2 cut(s) 64, 803
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 3 cut(s) 63, 912, 1019
BseNI ACTGG 1 cut(s) 1135
BsePI GCGCGC 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 1085, 1208
BseXI GCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 2 cut(s) 78, 836
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 428
BsiSI CCGG 2 cut(s) 115, 1113
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 64, 803
BsmAI GTCTC 2 cut(s) 1190, 1214
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 2 cut(s) 78, 836
Bsp1286I GDGCHC 1 cut(s) 428
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 5 cut(s) 508, 640, 793, 1258, 1302
BspACI CCGC 2 cut(s) 597, 837
BspANI GGCC 2 cut(s) 78, 836
BspCNI CTCAG 3 cut(s) 62, 913, 1018
BspFNI CGCG 1 cut(s) 383
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 846
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 1 cut(s) 1135
BssHII GCGCGC 1 cut(s) 381
BssMI GATC 5 cut(s) 508, 640, 793, 1258, 1302
BssSI CACGAG 1 cut(s) 880
Bst2BI CACGAG 1 cut(s) 880
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 7 cut(s) 34, 135, 559, 625, 703, 929, 1266
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 383, 615
BstDEI CTNAG 5 cut(s) 49, 395, 913, 921, 1005
BstF5I GGATG 2 cut(s) 73, 257
BstFNI CGCG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 3 cut(s) 57, 383, 385
BstKTI GATC 5 cut(s) 511, 643, 796, 1261, 1305
BstMAI GTCTC 2 cut(s) 1190, 1214
BstMBI GATC 5 cut(s) 508, 640, 793, 1258, 1302
BstMWI GCNNNNNNNGC 3 cut(s) 156, 833, 917
BstNI CCWGG 1 cut(s) 774
BstSCI CCNGG 3 cut(s) 113, 772, 1111
BstSFI CTRYAG 1 cut(s) 1023
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 2 cut(s) 508, 793
BstXI CCANNNNNNTGG 2 cut(s) 1038, 1162
BstYI RGATCY 2 cut(s) 508, 793
Bsu36I CCTNAGG 1 cut(s) 913
BsuI GTATCC 1 cut(s) 1039
BsuRI GGCC 2 cut(s) 78, 836
BtsCI GGATG 2 cut(s) 73, 257
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 4 cut(s) 39, 140, 411, 1284
Cac8I GCNNGC 2 cut(s) 383, 615
CaiI CAGNNNCTG 2 cut(s) 38, 1223
CfoI GCGC 3 cut(s) 57, 383, 385
Cfr13I GGNCC 2 cut(s) 1028, 1115
Csp6I GTAC 5 cut(s) 363, 463, 490, 850, 1010
CviAII CATG 8 cut(s) 63, 811, 823, 868, 904, 1168, 1256, 1306
CviQI GTAC 5 cut(s) 363, 463, 490, 850, 1010
DdeI CTNAG 5 cut(s) 49, 395, 913, 921, 1005
DpnI GATC 5 cut(s) 510, 642, 795, 1260, 1304
DpnII GATC 5 cut(s) 508, 640, 793, 1258, 1302
DrdI GACNNNNNNGTC 1 cut(s) 871
DseDI GACNNNNNNGTC 1 cut(s) 871
EaeI YGGCCR 1 cut(s) 834
Eco32I GATATC 1 cut(s) 1275
Eco47I GGWCC 2 cut(s) 1028, 1115
Eco81I CCTNAGG 1 cut(s) 913
EcoRII CCWGG 1 cut(s) 772
EcoRV GATATC 1 cut(s) 1275
FaeI CATG 8 cut(s) 66, 814, 826, 871, 907, 1171, 1259, 1309
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 746, 778
FaqI GGGAC 1 cut(s) 97
FatI CATG 8 cut(s) 62, 810, 822, 867, 903, 1167, 1255, 1305
FbaI TGATCA 2 cut(s) 1258, 1302
Fnu4HI GCNGC 3 cut(s) 345, 597, 837
FokI GGATG 2 cut(s) 80, 264
Fsp4HI GCNGC 3 cut(s) 345, 597, 837
FspBI CTAG 1 cut(s) 578
GlaI GCGC 3 cut(s) 56, 382, 384
GluI GCNGC 3 cut(s) 345, 597, 837
GsuI CTGGAG 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 2 cut(s) 78, 836
HapII CCGG 2 cut(s) 115, 1113
HhaI GCGC 3 cut(s) 57, 383, 385
Hin1II CATG 8 cut(s) 66, 814, 826, 871, 907, 1171, 1259, 1309
Hin6I GCGC 3 cut(s) 55, 381, 383
HinP1I GCGC 3 cut(s) 55, 381, 383
HinfI GANTC 6 cut(s) 41, 229, 632, 816, 953, 1146
HpaII CCGG 2 cut(s) 115, 1113
HphI GGTGA 1 cut(s) 1240
Hpy166II GTNNAC 3 cut(s) 490, 492, 1109
Hpy188I TCNGA 4 cut(s) 52, 234, 653, 789
Hpy188III TCNNGA 6 cut(s) 329, 454, 629, 804, 932, 1190
Hpy8I GTNNAC 3 cut(s) 490, 492, 1109
HpyAV CCTTC 5 cut(s) 82, 431, 562, 929, 1255
HpyCH4III ACNGT 7 cut(s) 34, 135, 559, 625, 703, 929, 1266
HpyCH4V TGCA 9 cut(s) 17, 104, 411, 416, 530, 903, 1205, 1217, 1229
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 833, 917
HpyF3I CTNAG 5 cut(s) 49, 395, 913, 921, 1005
Hsp92II CATG 8 cut(s) 66, 814, 826, 871, 907, 1171, 1259, 1309
HspAI GCGC 3 cut(s) 55, 381, 383
Ksp22I TGATCA 2 cut(s) 1258, 1302
Kzo9I GATC 5 cut(s) 508, 640, 793, 1258, 1302
LmnI GCTCC 3 cut(s) 917, 981, 1072
Lsp1109I GCAGC 1 cut(s) 356
LweI GCATC 4 cut(s) 356, 736, 1192, 1216
MaeI CTAG 1 cut(s) 578
MaeIII GTNAC 2 cut(s) 34, 368
MalI GATC 5 cut(s) 510, 642, 795, 1260, 1304
MboI GATC 5 cut(s) 508, 640, 793, 1258, 1302
MboII GAAGA 3 cut(s) 104, 666, 906
MflI RGATCY 2 cut(s) 508, 793
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 5 cut(s) 18, 211, 400, 707, 983
MmeI TCCRAC 3 cut(s) 821, 1003, 1123
MnlI CCTC 7 cut(s) 58, 579, 598, 1036, 1063, 1128, 1186
MroXI GAANNNNTTC 2 cut(s) 403, 1185
MseI TTAA 5 cut(s) 171, 321, 353, 710, 767
MslI CAYNNNNRTG 3 cut(s) 485, 519, 521
MspA1I CMGCKG 1 cut(s) 1211
MspI CCGG 2 cut(s) 115, 1113
MspR9I CCNGG 3 cut(s) 115, 774, 1113
Mva1269I GAATGC 1 cut(s) 532
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 156, 833, 917
NciI CCSGG 2 cut(s) 115, 1113
NdeII GATC 5 cut(s) 508, 640, 793, 1258, 1302
NlaIII CATG 8 cut(s) 66, 814, 826, 871, 907, 1171, 1259, 1309
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 34, 368
OliI CACNNNNGTG 1 cut(s) 519
PauI GCGCGC 1 cut(s) 381
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 2 cut(s) 403, 1185
PfeI GAWTC 6 cut(s) 41, 229, 632, 816, 953, 1146
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 3 cut(s) 346, 598, 838
PsiI TTATAA 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 772
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 1028, 1115
PstNI CAGNNNCTG 2 cut(s) 38, 1223
PsuI RGATCY 2 cut(s) 508, 793
PteI GCGCGC 1 cut(s) 381
PvuII CAGCTG 1 cut(s) 1211
RsaI GTAC 5 cut(s) 364, 464, 491, 851, 1011
RsaNI GTAC 5 cut(s) 363, 463, 490, 850, 1010
RseI CAYNNNNRTG 3 cut(s) 485, 519, 521
SaqAI TTAA 5 cut(s) 171, 321, 353, 710, 767
SatI GCNGC 3 cut(s) 345, 597, 837
Sau3AI GATC 5 cut(s) 508, 640, 793, 1258, 1302
Sau96I GGNCC 2 cut(s) 1028, 1115
ScrFI CCNGG 3 cut(s) 115, 774, 1113
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 4 cut(s) 356, 736, 1192, 1216
SfcI CTRYAG 1 cut(s) 1023
SinI GGWCC 2 cut(s) 1028, 1115
SmiMI CAYNNNNRTG 3 cut(s) 485, 519, 521
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
Sse9I AATT 5 cut(s) 18, 211, 400, 707, 983
SsiI CCGC 2 cut(s) 597, 837
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 3 cut(s) 113, 772, 1111
TaaI ACNGT 7 cut(s) 34, 135, 559, 625, 703, 929, 1266
TaqI TCGA 2 cut(s) 265, 1124
TasI AATT 5 cut(s) 18, 211, 400, 707, 983
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 599, 839
TfiI GAWTC 6 cut(s) 41, 229, 632, 816, 953, 1146
Tru1I TTAA 5 cut(s) 171, 321, 353, 710, 767
Tru9I TTAA 5 cut(s) 171, 321, 353, 710, 767
TscAI CASTG 4 cut(s) 39, 140, 418, 1284
TseFI GTSAC 2 cut(s) 34, 368
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 2 cut(s) 34, 368
TspDTI ATGAA 6 cut(s) 17, 21, 450, 680, 857, 1283
TspRI CASTG 4 cut(s) 39, 140, 418, 1284
VpaK11BI GGWCC 2 cut(s) 1028, 1115
XmnI GAANNNNTTC 2 cut(s) 403, 1185
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.