Rorug05G0288100

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001137
Physical Location & Seq
Forward (+)
33051096 .. 33054326
3231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0288100.1

Sequence Viewer

Length: 528 bp
ATGAAAGTTCCAACCAAGATAAATGAAAAATATATCAAGTGGTTTGTCACACTTGATAGTGAAGATAATATTTTAAGTAGAGGACAATTTAAAGTTGAATCTGTGGCATTGGGTAATGTGTTTCATATTACTGCTAAAGAGGAGAATACTTTCAGTAATGATGCAACAGCTAAAGATATTAAACAGATGATTGGTCTGACAAAGTCAACCTTTGGCACGGCTTTTGTTCAATGTCTGGACATCAACACTCGGATGAAATATATACCAGCATGGGACCTACTATGGGAAACCCTGACTGGAAGGGAGCATCTGCTTTTTTATGGAAGACTTGAGAACCTCAAAGGTTCTGGATTAAGACAAGCAGTGGAAGAATCTTTGAAAAGTGTCAATCTATTTCATGGTGGGGTTGCAGACAAAAGAGCTGGAAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTCGCAATTTCACTGATAGGTGATCCTAAAGTATATGCTGATCACTTTTTAGCTGCTCTAGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

175

Amino Acids

19.57

Weight (kDa)

9.28

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 3 cut(s) 98, 230, 379
AluBI AGCT 4 cut(s) 170, 422, 512, 521
AluI AGCT 4 cut(s) 170, 422, 512, 521
AlwI GGATC 1 cut(s) 476
ApeKI GCWGC 1 cut(s) 512
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 499
BceAI ACGGC 1 cut(s) 234
BclI TGATCA 1 cut(s) 499
BfaI CTAG 1 cut(s) 518
BisI GCNGC 1 cut(s) 513
BlpI GCTNAGC 1 cut(s) 455
BlsI GCNGC 1 cut(s) 514
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 275
BmsI GCATC 2 cut(s) 151, 316
BpiI GAAGAC 1 cut(s) 331
Bpu1102I GCTNAGC 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 499
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 287
Bsp143I GATC 2 cut(s) 481, 499
Bsp1720I GCTNAGC 1 cut(s) 455
BspLI GGNNCC 1 cut(s) 275
BspPI GGATC 1 cut(s) 476
BsrI ACTGG 1 cut(s) 301
BssMI GATC 2 cut(s) 481, 499
Bst6I CTCTTC 1 cut(s) 440
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 2 cut(s) 484, 502
BstMBI GATC 2 cut(s) 481, 499
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstV1I GCAGC 1 cut(s) 499
BstV2I GAAGAC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 369, 470
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 1 cut(s) 448
CviAII CATG 2 cut(s) 270, 398
CviJI RGCY 6 cut(s) 170, 221, 422, 454, 512, 521
CviKI_1 RGCY 6 cut(s) 170, 221, 422, 454, 512, 521
DdeI CTNAG 1 cut(s) 455
DpnI GATC 2 cut(s) 483, 501
DpnII GATC 2 cut(s) 481, 499
DraI TTTAAA 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 274
FaeI CATG 2 cut(s) 273, 401
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 269, 397
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 1 cut(s) 518
GluI GCNGC 1 cut(s) 513
HgaI GACGC 1 cut(s) 448
Hin1II CATG 2 cut(s) 273, 401
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 98, 371
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 198, 252
Hpy188III TCNNGA 2 cut(s) 236, 348
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 2 cut(s) 294, 444
HpyCH4V TGCA 2 cut(s) 164, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 455
Hsp92II CATG 2 cut(s) 273, 401
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 2 cut(s) 481, 499
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 6 cut(s) 221, 279, 282, 305, 333, 408
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 2 cut(s) 151, 316
MaeI CTAG 1 cut(s) 518
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 483, 501
MboI GATC 2 cut(s) 481, 499
MboII GAAGA 4 cut(s) 74, 336, 380, 457
MluCI AATT 2 cut(s) 86, 465
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 4 cut(s) 74, 133, 347, 431
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 4 cut(s) 74, 90, 180, 353
MslI CAYNNNNRTG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 518
NdeII GATC 2 cut(s) 481, 499
NlaIII CATG 2 cut(s) 273, 401
NlaIV GGNNCC 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 98, 371
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 514
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 275
PspPI GGNCC 1 cut(s) 274
PspPPI RGGWCCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 4 cut(s) 74, 90, 180, 353
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 2 cut(s) 481, 499
Sau96I GGNCC 1 cut(s) 274
SfaNI GCATC 2 cut(s) 151, 316
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 86, 465
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 518
TasI AATT 2 cut(s) 86, 465
TfiI GAWTC 2 cut(s) 98, 371
Tru1I TTAA 4 cut(s) 74, 90, 180, 353
Tru9I TTAA 4 cut(s) 74, 90, 180, 353
TscAI CASTG 2 cut(s) 369, 477
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 6 cut(s) 17, 39, 113, 269, 386, 458
TspRI CASTG 2 cut(s) 369, 477
Tth111I GACNNNGTC 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.