RchiOBHm_Chr6g0250851

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001137
Physical Location & Seq
Reverse (-)
6173668 .. 6182105
8438 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22486

Sequence Viewer

Length: 528 bp
ATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACACTGATAGAGCCAACATCAGGAAACATGGGAATCAGCATGGCTTTTATGGCCGCAGTGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGAATGTGTATAAGAGCCTTCGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAAGACTCAGGTACATTCTGAAACTGCAGGACCTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTAATGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAACATATATGGAGTGGAGCCTGCTGAAAGTAATAATAGACTAAATGGTGGTAAACCAGTGTTCAAGGGCCATTCTATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

175

Amino Acids

18.76

Weight (kDa)

7.73

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 9 - 159 2.3e-41 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 395
AciI CCGC 2 cut(s) 102, 390
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 2 cut(s) 116, 312
AfiI CCNNNNNNNGG 3 cut(s) 68, 212, 405
AgsI TTSAA 2 cut(s) 7, 508
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 150, 185
AluI AGCT 2 cut(s) 150, 185
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 2 cut(s) 99, 511
AspS9I GGNCC 2 cut(s) 329, 511
AvaII GGWCC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 395
BauI CACGAG 1 cut(s) 145
BccI CCATC 3 cut(s) 115, 211, 407
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 39
BciVI GTATCC 1 cut(s) 340
BfmI CTRYAG 1 cut(s) 324
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 329, 511
BmiI GGNNCC 2 cut(s) 397, 462
BmrFI CCNGG 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 60
BsaXI ACNNNNNCTCC 4 cut(s) 190, 213, 220, 243
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 212, 405
Bse1I ACTGG 1 cut(s) 500
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 3 cut(s) 68, 212, 405
BseMII CTCAG 3 cut(s) 177, 320, 324
BseNI ACTGG 1 cut(s) 500
BshFI GGCC 2 cut(s) 101, 513
BshNI GGYRCC 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 68, 212, 405
BsnI GGCC 2 cut(s) 101, 513
BspACI CCGC 2 cut(s) 102, 390
BspANI GGCC 2 cut(s) 101, 513
BspCNI CTCAG 3 cut(s) 178, 319, 325
BspLI GGNNCC 2 cut(s) 397, 462
BspMAI CTGCAG 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 395
BsrI ACTGG 1 cut(s) 500
BssSI CACGAG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 229, 417
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 3 cut(s) 186, 306, 333
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 98, 182
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 324
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 2 cut(s) 101, 513
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 4 cut(s) 50, 111, 198, 507
Cac8I GCNNGC 1 cut(s) 465
CaiI CAGNNNCTG 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 329, 511
Csp6I GTAC 2 cut(s) 115, 311
CviAII CATG 3 cut(s) 76, 88, 133
CviQI GTAC 2 cut(s) 115, 311
DdeI CTNAG 3 cut(s) 186, 306, 333
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 329
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 3 cut(s) 79, 91, 136
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 3 cut(s) 75, 87, 132
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 2 cut(s) 101, 513
Hin1II CATG 3 cut(s) 79, 91, 136
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 4 cut(s) 81, 193, 254, 304
Hpy166II GTNNAC 2 cut(s) 364, 497
Hpy188I TCNGA 2 cut(s) 182, 319
Hpy188III TCNNGA 2 cut(s) 69, 232
Hpy8I GTNNAC 2 cut(s) 364, 497
HpyAV CCTTC 2 cut(s) 187, 229
HpyCH4III ACNGT 2 cut(s) 229, 417
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 182
HpyF3I CTNAG 3 cut(s) 186, 306, 333
Hsp92II CATG 3 cut(s) 79, 91, 136
LmnI GCTCC 3 cut(s) 182, 282, 460
MaeIII GTNAC 1 cut(s) 443
MboII GAAGA 1 cut(s) 171
MluCI AATT 2 cut(s) 284, 381
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 2 cut(s) 304, 391
MnlI CCTC 4 cut(s) 215, 216, 337, 386
MseI TTAA 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 98, 182
NlaIII CATG 3 cut(s) 79, 91, 136
NlaIV GGNNCC 2 cut(s) 397, 462
PfeI GAWTC 3 cut(s) 81, 193, 254
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 397, 462
PspPI GGNCC 2 cut(s) 329, 511
PspPPI RGGWCCY 1 cut(s) 329
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 116, 312
RsaNI GTAC 2 cut(s) 115, 311
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 2 cut(s) 329, 511
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 39
SetI ASST 5 cut(s) 152, 187, 249, 312, 334
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 329
Sse9I AATT 2 cut(s) 284, 381
SsiI CCGC 2 cut(s) 102, 390
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 229, 417
TasI AATT 2 cut(s) 284, 381
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 3 cut(s) 81, 193, 254
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 4 cut(s) 57, 111, 205, 507
TspRI CASTG 4 cut(s) 57, 111, 205, 507
VpaK11BI GGWCC 1 cut(s) 329
XagI CCTNNNNNAGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.