Rroxscaffold_4G00322970

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001137
Physical Location & Seq
Forward (+)
53580679 .. 53585276
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322970.1

Sequence Viewer

Length: 342 bp
ATGCTTATGCTCTTGAAACTGCTGTTTTATTCAGTATGCTCGAAACTACAGGTTCTGAGATATGGTGACATCTTTGTAACGGGAATTCGTAGCGGAGGCACCATCTCTGGGGTTGAACAGTATCTCAAATCTCAATACCCTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTAGCAATGGGGTTGGATTCAAACCCAATATATTGGGCATGGACATAATGAAAGAGTTCTTGAGCTGCTTCGTATATGTGATTTTGCTGACAAAGTCTTCAACACTGGTGGCAACTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

113

Amino Acids

12.34

Weight (kDa)

8.81

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 23 - 99 4e-09 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 93
AcsI RAATTY 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 4 cut(s) 16, 116, 241, 321
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 204
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 100, 165
BmrFI CCNGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 100, 165
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 56
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 206
CsiI ACCWGGT 1 cut(s) 202
CspCI CAANNNNNGTGG 1 cut(s) 309
CviAII CATG 1 cut(s) 259
CviJI RGCY 2 cut(s) 166, 285
CviKI_1 RGCY 2 cut(s) 166, 285
DdeI CTNAG 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 262
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 222
GluI GCNGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 262
HinfI GANTC 1 cut(s) 237
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 2 cut(s) 13, 280
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 1 cut(s) 262
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 7 cut(s) 35, 93, 153, 180, 189, 216, 311
Lsp1109I GCAGC 1 cut(s) 272
MabI ACCWGGT 1 cut(s) 202
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 65, 76
MboII GAAGA 1 cut(s) 309
MluCI AATT 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 2 cut(s) 89, 219
MroXI GAANNNNTTC 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 100, 165
NmuCI GTSAC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 100, 165
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 313
SatI GCNGC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 204
SetI ASST 3 cut(s) 54, 208, 287
SexAI ACCWGGT 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 41, 215
TasI AATT 1 cut(s) 84
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.