RLG00000001565

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001137
Physical Location & Seq
Forward (+)
17582564 .. 17584564
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001565

Sequence Viewer

Length: 633 bp
ATGTGGAGCCTATCACCTTTGGAAGTAATGGCATTAGATCCAGTTGTTCTACCTACAGAAGCTAGTCAGAGAAGACCAGCACCTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGCCTTCACTAACGACATCAGGAAACATGAGAATCAACATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCTGTCTTACACGAGCTTGGAGAGAACATTGTGCATCAGAGCCTTAGGAGTTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCACGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTGAGGTACATTTTGAAACTACAGGACCAGAGATATGGGAGGATACTAATGGAAAAATATATGGAGTGGAGCTTGTTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTAGAAATGGGGTTGGATTCAAACCCAATATATTGGCCATGGACATAATGGAAAGAGTTCTTGAGCTACTTCATGTATATGATTTCGCTGACAAAGTCTTCAACACCAGTGGTAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

211

Amino Acids

22.94

Weight (kDa)

5.24

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 23 - 148 2.3e-17 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 91
AasI GACNNNNNNGTC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 91
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 2 cut(s) 180, 546
AfaI GTAC 2 cut(s) 197, 393
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 5 cut(s) 94, 401, 464, 532, 613
AjnI CCWGG 2 cut(s) 124, 493
AluBI AGCT 4 cut(s) 62, 231, 457, 577
AluI AGCT 4 cut(s) 62, 231, 457, 577
AlwI GGATC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 2 cut(s) 180, 546
Asp700I GAANNNNTTC 1 cut(s) 567
AspS9I GGNCC 2 cut(s) 410, 497
AsuHPI GGTGA 1 cut(s) 6
AvaII GGWCC 2 cut(s) 410, 497
AxyI CCTNAGG 1 cut(s) 259
BalI TGGCCA 1 cut(s) 548
BauI CACGAG 1 cut(s) 226
BbsI GAAGAC 2 cut(s) 79, 601
BccI CCATC 2 cut(s) 196, 292
BciT130I CCWGG 2 cut(s) 126, 495
BciVI GTATCC 1 cut(s) 421
BfaI CTAG 2 cut(s) 63, 513
BfmI CTRYAG 2 cut(s) 54, 405
BfuAI ACCTGC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 126, 495
Bme18I GGWCC 2 cut(s) 410, 497
BmgT120I GGNCC 2 cut(s) 410, 497
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 2 cut(s) 126, 495
BmsI GCATC 2 cut(s) 88, 258
BpiI GAAGAC 2 cut(s) 79, 601
BpmI CTGGAG 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 549
BsaXI ACNNNNNCTCC 4 cut(s) 271, 294, 301, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 41, 618
Bse21I CCTNAGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 126, 495
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 41, 618
BshFI GGCC 2 cut(s) 182, 548
BslI CCNNNNNNNGG 1 cut(s) 293
BsnI GGCC 2 cut(s) 182, 548
Bsp143I GATC 1 cut(s) 37
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 1 cut(s) 183
BspANI GGCC 2 cut(s) 182, 548
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 8
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 41, 618
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 1 cut(s) 37
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 126, 495
Bst4CI ACNGT 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 259, 387
BstDSI CCRYGG 1 cut(s) 549
BstENI CCTNNNNNAGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 126, 495
BstSCI CCNGG 2 cut(s) 124, 493
BstSFI CTRYAG 2 cut(s) 54, 405
BstV2I GAAGAC 2 cut(s) 79, 601
BstX2I RGATCY 1 cut(s) 37
BstXI CCANNNNNNTGG 2 cut(s) 420, 544
BstYI RGATCY 1 cut(s) 37
Bsu36I CCTNAGG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 182, 548
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 279, 625
BveI ACCTGC 1 cut(s) 91
CaiI CAGNNNCTG 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 410, 497
CsiI ACCWGGT 1 cut(s) 493
Csp6I GTAC 2 cut(s) 196, 392
CspCI CAANNNNNGTGG 1 cut(s) 601
CviAII CATG 5 cut(s) 157, 169, 214, 550, 584
CviQI GTAC 2 cut(s) 196, 392
DdeI CTNAG 2 cut(s) 259, 387
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 2 cut(s) 180, 546
Eco130I CCWWGG 1 cut(s) 549
Eco47I GGWCC 2 cut(s) 410, 497
Eco81I CCTNAGG 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 124, 493
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 5 cut(s) 160, 172, 217, 553, 587
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 5 cut(s) 156, 168, 213, 549, 583
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 63, 513
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 182, 548
Hin1II CATG 5 cut(s) 160, 172, 217, 553, 587
HinfI GANTC 4 cut(s) 162, 274, 335, 528
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 2 cut(s) 69, 254
Hpy188III TCNNGA 4 cut(s) 150, 313, 572, 630
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 2 cut(s) 144, 310
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 259, 387
Hsp92II CATG 5 cut(s) 160, 172, 217, 553, 587
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 3 cut(s) 6, 363, 454
LweI GCATC 2 cut(s) 88, 258
MabI ACCWGGT 1 cut(s) 493
MaeI CTAG 2 cut(s) 63, 513
MaeIII GTNAC 2 cut(s) 310, 623
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 84, 601
MflI RGATCY 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 548
MmeI TCCRAC 2 cut(s) 385, 505
MnlI CCTC 5 cut(s) 296, 297, 382, 418, 510
Mox20I TGGCCA 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 548
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 588
Msp20I TGGCCA 1 cut(s) 548
MspR9I CCNGG 2 cut(s) 126, 495
MvaI CCWGG 2 cut(s) 126, 495
MwoI GCNNNNNNNGC 1 cut(s) 179
NcoI CCATGG 1 cut(s) 549
NdeII GATC 1 cut(s) 37
NlaIII CATG 5 cut(s) 160, 172, 217, 553, 587
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 310
PaqCI CACCTGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 4 cut(s) 162, 274, 335, 528
PflFI GACNNNGTC 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 124, 493
PspGI CCWGG 2 cut(s) 124, 493
PspN4I GGNNCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 410, 497
PspPPI RGGWCCY 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 2 cut(s) 197, 393
RsaNI GTAC 2 cut(s) 196, 392
RseI CAYNNNNRTG 1 cut(s) 588
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 2 cut(s) 410, 497
ScrFI CCNGG 2 cut(s) 126, 495
SexAI ACCWGGT 1 cut(s) 493
SfaNI GCATC 2 cut(s) 88, 258
SfcI CTRYAG 2 cut(s) 54, 405
SinI GGWCC 2 cut(s) 410, 497
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 1 cut(s) 365
SsiI CCGC 1 cut(s) 183
SspMI CTAG 2 cut(s) 63, 513
StyD4I CCNGG 2 cut(s) 124, 493
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 506
TasI AATT 1 cut(s) 365
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 4 cut(s) 162, 274, 335, 528
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 2 cut(s) 286, 625
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 203, 572
TspRI CASTG 2 cut(s) 286, 625
Tth111I GACNNNGTC 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 410, 497
XagI CCTNNNNNAGG 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 63, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.