Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001137

Physical Location & Seq

Genomic Coordinates Reverse (-)

24412508 .. 24430261

Gene Structure 17754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCTTATACTCTTGAAACTGCTGTTTTATTCAGTATGCTCAAAACTACAGGATCTGAGATATGGTGACATCTTTGTAACGGGAATTGGTAGTGGAGGCACCATCTCTGGGGTTGAACAGTATCTCAAATCTCAATACCCTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTAGCAATGGGGTTGGATTCAAACCCAATATATTGGGCATGGACATAATGAAAGAGTTCTTGAGTGCTTCCATTGAATCAAGGAGGGAATGGAGTCAAAATGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

109

Amino Acids

11.95

Weight (kDa)

6.55

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	23 - 95	1.9e-10	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61440 AT3G61440 AT3G61440 AT3G61440
fragaria_vesca	FvH4_7g14710
malus_domestica	MD01G1065600.v1.1 MD07G1135000.v1.1
prunus_persica	Prupe.2G172800_v2.0.a1
pyrus_communis	pycom01g09490 pycom07g13220
rosa_chinensis	RchiOBHm_Chr1g0322951 RchiOBHm_Chr1g0327551 RchiOBHm_Chr1g0327561 RchiOBHm_Chr1g0356641 RchiOBHm_Chr2g0170281 RchiOBHm_Chr3g0492881 RchiOBHm_Chr5g0039681 RchiOBHm_Chr5g0054831 RchiOBHm_Chr6g0250541 RchiOBHm_Chr6g0250851 RchiOBHm_Chr7g0210971 RchiOBHm_Chr7g0222251 RchiOBHm_Chr7g0222261
rosa_laevigata	RLG00000001565 RLG00000002082 RLG00000022915 RLG00000028090 RLG00000029440 RLG00000029484 RLG00000032412 RLG00000036876
rosa_multiflora	Rmu_sc0001644.1_g000033 Rmu_sc0009428.1_g000004 Rmu_sc0012929.1_g000002 Rmu_ssc0000270.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025850 Rroxscaffold_1G00026260 Rroxscaffold_1G00032060 Rroxscaffold_3G00237260 Rroxscaffold_4G00299460 Rroxscaffold_4G00322970 Rroxscaffold_5G00365280 Rroxscaffold_7G00156280
rosa_rugosa	Rorug01G0240400 Rorug01G0250300 Rorug05G0288100 Rorug05G0289100.1
rosa_samantha	Rh1BG223300 Rh1BG231800 Rh1CG247600 Rh1DG250200 Rh5CG392800 Rh5DG268500 Rh6CG145900 Rh7BG266300
rosa_wichuraiana	Rw1G023370 Rw6G009010 Rw7G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	16, 116, 241, 296
AjnI	CCWGG	1 cut(s)	202
AlwI	GGATC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	98
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	204
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	100, 165
BmrFI	CCNGG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	100, 165
BspPI	GGATC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	232
BssMI	GATC	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	56
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	206
CsiI	ACCWGGT	1 cut(s)	202
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	1 cut(s)	166
CviKI_1	RGCY	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	262
FaiI	YATR	9 cut(s)	8, 37, 63, 154, 156, 185, 251, 260, 266
FatI	CATG	1 cut(s)	258
FspBI	CTAG	1 cut(s)	222
Hin1II	CATG	1 cut(s)	262
HinfI	GANTC	3 cut(s)	237, 296, 313
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	13, 280
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	6 cut(s)	35, 93, 153, 180, 189, 216
MabI	ACCWGGT	1 cut(s)	202
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	65, 76
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	3 cut(s)	89, 219, 297
MroXI	GAANNNNTTC	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	2 cut(s)	100, 165
NmuCI	GTSAC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	237, 296
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	100, 165
PspPI	GGNCC	1 cut(s)	206
PspPPI	RGGWCCY	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	1 cut(s)	208
SexAI	ACCWGGT	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	237, 296
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.