pycom07g13220

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0001137
Physical Location & Seq
Reverse (-)
14830493 .. 14833729
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13220.4

Sequence Viewer

Length: 1131 bp
ATGGCGGCTTTAAGGAGCTTTCTGAAGAAAGGGTCCTCTGTGCTTTGCAATGGAGCCATGAGACGGAAACTGTTCTCCACCGAGGTGTCGCAACCCCTCACTGATTCTCCATCTTTTGCTCAGAGAATCAGAAATCTCCCCAAGGATCTTCCTGGCACCCAAATCAAAACCCAAGTTTCCCAACTCATTGGTAGAACTCCCATTGTTTATCTTAACAAAGTCACTGAGGGATGTGGAGCTTATATTGCCGTCAAGCAAGAGATGTTCCAACCCACCTCTAGCATCAAGGACAGACCAGCACTTTCTATGATCAACGATGCAGAAGAGAAGGGCTTGATAACTCCTGGGGAGACAATACTGATTGAACCAACATCAGGAAATATGGGAATCAGCATGGCGTTTATGGCGGCCATGAGAGGGTATAAAATGGTTTTAACTATGCCATCTTACACAAGCTTGGAGAGAAGGGTGTGTATGAGATGCTTTGGAGCTGATTTGATTCTCACTGATCCAACCAAGGGGATGGGAGGAACTGTTAAGAAGGCATATGATCTTCTGGAATCCACGCCCAATGCCTATATGCTGCAACAATTCTCAAATCCCGCCAATACTAAGGTACATTTTGAAACTACAGGCCCTGAGATATGGGAGGATACCAACGGACAAGTTGACATCTTCGTAATGGGAATCGGTAGCGGAGGCACTGTCTCTGGGGTCGGGCAGTATCTCAAATCTAAAAATCCTAATGTTCAGATATATGGAGTGGAGCCTGCTGAAAGTAATGTGCTGAATGGCGGTAAACCAGGTCCTCATTCAATCATGGGCAATGGGGTTGGGTTCAAACCAGATATATTGGACTTGGATATGTTGGAAAGAGTTATTGAGGTTACTAGTGAAGATGCAGTAAACATGGCAAGGCAATTGGCATTGAAAGAAGGGCTTATGGTCGGAATATCGTCTGGAGCCAACACTGTGGCAGCAATGGAGCTTGCTAAAAAGCCAGAAAACAAAGGCAAACTCATTGTGACTGTTCACCCGAGCTTTGGGGAGCGATACTTGTCATCCGTTCTATTTCAAGAGCTGAGGCAGGAAGCCGAAAACATGCAACCAGTTGCCGTCGACTATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

377

Amino Acids

40.8

Weight (kDa)

6.85

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 1119
AciI CCGC 5 cut(s) 5, 407, 603, 696, 795
AclWI GGATC 2 cut(s) 153, 503
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 1 cut(s) 618
AfiI CCNNNNNNNGG 5 cut(s) 63, 374, 417, 518, 1043
AgsI TTSAA 6 cut(s) 365, 626, 816, 841, 931, 1076
AhlI ACTAGT 1 cut(s) 890
AjnI CCWGG 3 cut(s) 151, 343, 802
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 7 cut(s) 18, 239, 456, 491, 988, 1041, 1081
AluI AGCT 7 cut(s) 18, 239, 456, 491, 988, 1041, 1081
Alw26I GTCTC 3 cut(s) 55, 344, 712
AlwI GGATC 2 cut(s) 153, 503
AlwNI CAGNNNCTG 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 1036
AoxI GGCC 2 cut(s) 408, 634
ApeKI GCWGC 2 cut(s) 583, 977
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 3 cut(s) 33, 635, 806
AsuHPI GGTGA 1 cut(s) 1025
AvaI CYCGRG 1 cut(s) 1036
AvaII GGWCC 2 cut(s) 33, 806
BanI GGYRCC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 1082
BbvI GCAGC 2 cut(s) 570, 989
BccI CCATC 3 cut(s) 118, 451, 517
BceAI ACGGC 2 cut(s) 233, 1100
BciT130I CCWGG 3 cut(s) 153, 345, 804
BciVI GTATCC 1 cut(s) 646
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 55, 344, 712
BcuI ACTAGT 1 cut(s) 890
BfaI CTAG 2 cut(s) 279, 891
BfmI CTRYAG 1 cut(s) 630
BfuI GTATCC 1 cut(s) 646
BisI GCNGC 4 cut(s) 6, 408, 584, 978
BlsI GCNGC 4 cut(s) 7, 409, 585, 979
Bme1390I CCNGG 3 cut(s) 153, 345, 804
Bme18I GGWCC 2 cut(s) 33, 806
BmeT110I CYCGRG 1 cut(s) 1036
BmgT120I GGNCC 3 cut(s) 33, 635, 806
BmiI GGNNCC 5 cut(s) 34, 55, 157, 768, 964
BmrFI CCNGG 3 cut(s) 153, 345, 804
BmsI GCATC 4 cut(s) 291, 307, 470, 889
BpmI CTGGAG 1 cut(s) 981
Bpu10I CCTNAGC 1 cut(s) 1082
BsaJI CCNNGG 4 cut(s) 81, 141, 344, 516
BsaXI ACNNNNNCTCC 6 cut(s) 91, 121, 519, 549, 690, 720
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 374, 417, 518, 1043
Bse1I ACTGG 1 cut(s) 1109
Bse3DI GCAATG 3 cut(s) 55, 832, 987
BseBI CCWGG 3 cut(s) 153, 345, 804
BseDI CCNNGG 4 cut(s) 81, 141, 344, 516
BseGI GGATG 3 cut(s) 236, 528, 1061
BseLI CCNNNNNNNGG 5 cut(s) 63, 374, 417, 518, 1043
BseMI GCAATG 3 cut(s) 55, 832, 987
BseMII CTCAG 4 cut(s) 134, 216, 630, 1073
BseNI ACTGG 1 cut(s) 1109
BseXI GCAGC 2 cut(s) 570, 989
BshFI GGCC 2 cut(s) 410, 636
BshNI GGYRCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 1036
BslI CCNNNNNNNGG 5 cut(s) 63, 374, 417, 518, 1043
BsmAI GTCTC 3 cut(s) 55, 344, 712
BsmBI CGTCTC 1 cut(s) 55
BsnI GGCC 2 cut(s) 410, 636
BsoBI CYCGRG 1 cut(s) 1036
Bsp143I GATC 4 cut(s) 145, 309, 508, 550
BspACI CCGC 5 cut(s) 5, 407, 603, 696, 795
BspANI GGCC 2 cut(s) 410, 636
BspCNI CTCAG 4 cut(s) 133, 217, 631, 1074
BspLI GGNNCC 5 cut(s) 34, 55, 157, 768, 964
BspPI GGATC 2 cut(s) 153, 503
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 3 cut(s) 55, 832, 987
BsrI ACTGG 1 cut(s) 1109
BssECI CCNNGG 4 cut(s) 81, 141, 344, 516
BssMI GATC 4 cut(s) 145, 309, 508, 550
BssT1I CCWWGG 2 cut(s) 141, 516
Bst2UI CCWGG 3 cut(s) 153, 345, 804
Bst4CI ACNGT 5 cut(s) 72, 535, 706, 973, 1030
Bst6I CTCTTC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 771, 990
BstDEI CTNAG 5 cut(s) 120, 225, 612, 639, 1082
BstF5I GGATG 3 cut(s) 236, 528, 1061
BstKTI GATC 4 cut(s) 148, 312, 511, 553
BstMAI GTCTC 3 cut(s) 55, 344, 712
BstMBI GATC 4 cut(s) 145, 309, 508, 550
BstMWI GCNNNNNNNGC 2 cut(s) 245, 404
BstNI CCWGG 3 cut(s) 153, 345, 804
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 3 cut(s) 151, 343, 802
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 570, 989
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 3 cut(s) 188, 523, 973
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 2 cut(s) 410, 636
BtsCI GGATG 3 cut(s) 236, 528, 1061
BtsIMutI CAGTG 5 cut(s) 99, 222, 504, 702, 969
Cac8I GCNNGC 2 cut(s) 771, 990
CaiI CAGNNNCTG 1 cut(s) 638
Cfr13I GGNCC 3 cut(s) 33, 635, 806
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 1 cut(s) 617
CviAII CATG 6 cut(s) 58, 394, 412, 820, 910, 1102
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 5 cut(s) 120, 225, 612, 639, 1082
DpnI GATC 4 cut(s) 147, 311, 510, 552
DpnII GATC 4 cut(s) 145, 309, 508, 550
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 141, 516
Eco47I GGWCC 2 cut(s) 33, 806
Eco57I CTGAAG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 1036
EcoO109I RGGNCCY 3 cut(s) 33, 635, 806
EcoRII CCWGG 3 cut(s) 151, 343, 802
EcoT14I CCWWGG 2 cut(s) 141, 516
ErhI CCWWGG 2 cut(s) 141, 516
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 6 cut(s) 61, 397, 415, 823, 913, 1105
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FatI CATG 6 cut(s) 57, 393, 411, 819, 909, 1101
FauI CCCGC 1 cut(s) 610
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 1 cut(s) 1119
Fnu4HI GCNGC 4 cut(s) 6, 408, 584, 978
FokI GGATG 3 cut(s) 243, 535, 1048
Fsp4HI GCNGC 4 cut(s) 6, 408, 584, 978
FspBI CTAG 2 cut(s) 279, 891
GluI GCNGC 4 cut(s) 6, 408, 584, 978
GsuI CTGGAG 1 cut(s) 981
HaeIII GGCC 2 cut(s) 410, 636
Hin1II CATG 6 cut(s) 61, 397, 415, 823, 913, 1105
HincII GTYRAC 2 cut(s) 670, 1120
HindII GTYRAC 2 cut(s) 670, 1120
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 6 cut(s) 104, 126, 387, 499, 560, 687
HphI GGTGA 1 cut(s) 1025
Hpy166II GTNNAC 5 cut(s) 670, 800, 907, 1033, 1120
Hpy188I TCNGA 5 cut(s) 24, 123, 131, 753, 950
Hpy188III TCNNGA 4 cut(s) 375, 557, 960, 1076
Hpy8I GTNNAC 5 cut(s) 670, 800, 907, 1033, 1120
Hpy99I CGWCG 1 cut(s) 1121
HpyAV CCTTC 4 cut(s) 322, 459, 535, 929
HpyCH4III ACNGT 5 cut(s) 72, 535, 706, 973, 1030
HpyCH4V TGCA 5 cut(s) 48, 320, 586, 902, 1105
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 404
HpyF3I CTNAG 5 cut(s) 120, 225, 612, 639, 1082
Hsp92II CATG 6 cut(s) 61, 397, 415, 823, 913, 1105
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 4 cut(s) 145, 309, 508, 550
LmnI GCTCC 8 cut(s) 15, 53, 236, 488, 766, 962, 985, 1048
Lsp1109I GCAGC 2 cut(s) 570, 989
LweI GCATC 4 cut(s) 291, 307, 470, 889
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 2 cut(s) 279, 891
MaeIII GTNAC 3 cut(s) 220, 886, 1024
MalI GATC 4 cut(s) 147, 311, 510, 552
MboI GATC 4 cut(s) 145, 309, 508, 550
MboII GAAGA 6 cut(s) 37, 140, 335, 545, 667, 908
MfeI CAATTG 1 cut(s) 920
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 590, 920
MmeI TCCRAC 4 cut(s) 292, 536, 849, 928
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 5 cut(s) 11, 213, 434, 537, 1129
MslI CAYNNNNRTG 1 cut(s) 83
MspR9I CCNGG 3 cut(s) 153, 345, 804
MunI CAATTG 1 cut(s) 920
MvaI CCWGG 3 cut(s) 153, 345, 804
MwoI GCNNNNNNNGC 2 cut(s) 245, 404
NdeI CATATG 1 cut(s) 547
NdeII GATC 4 cut(s) 145, 309, 508, 550
NlaIII CATG 6 cut(s) 61, 397, 415, 823, 913, 1105
NlaIV GGNNCC 5 cut(s) 34, 55, 157, 768, 964
NmuCI GTSAC 2 cut(s) 220, 1024
NspI RCATGY 1 cut(s) 1105
OliI CACNNNNGTG 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 6 cut(s) 104, 126, 387, 499, 560, 687
PkrI GCNGC 4 cut(s) 7, 409, 585, 979
PpuMI RGGWCCY 2 cut(s) 33, 806
Psp5II RGGWCCY 2 cut(s) 33, 806
Psp6I CCWGG 3 cut(s) 151, 343, 802
PspGI CCWGG 3 cut(s) 151, 343, 802
PspN4I GGNNCC 5 cut(s) 34, 55, 157, 768, 964
PspPI GGNCC 3 cut(s) 33, 635, 806
PspPPI RGGWCCY 2 cut(s) 33, 806
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
RseI CAYNNNNRTG 1 cut(s) 83
SalI GTCGAC 1 cut(s) 1118
SaqAI TTAA 5 cut(s) 11, 213, 434, 537, 1129
SatI GCNGC 4 cut(s) 6, 408, 584, 978
Sau3AI GATC 4 cut(s) 145, 309, 508, 550
Sau96I GGNCC 3 cut(s) 33, 635, 806
ScrFI CCNGG 3 cut(s) 153, 345, 804
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 4 cut(s) 291, 307, 470, 889
SfcI CTRYAG 1 cut(s) 630
SinI GGWCC 2 cut(s) 33, 806
SmiMI CAYNNNNRTG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 890
Sse9I AATT 2 cut(s) 590, 920
SsiI CCGC 5 cut(s) 5, 407, 603, 696, 795
SspMI CTAG 2 cut(s) 279, 891
StyD4I CCNGG 3 cut(s) 151, 343, 802
StyI CCWWGG 2 cut(s) 141, 516
TaaI ACNGT 5 cut(s) 72, 535, 706, 973, 1030
TaqI TCGA 1 cut(s) 1119
TasI AATT 2 cut(s) 590, 920
TauI GCSGC 2 cut(s) 8, 410
TfiI GAWTC 6 cut(s) 104, 126, 387, 499, 560, 687
Tru1I TTAA 5 cut(s) 11, 213, 434, 537, 1129
Tru9I TTAA 5 cut(s) 11, 213, 434, 537, 1129
TscAI CASTG 5 cut(s) 106, 229, 511, 709, 976
TseFI GTSAC 2 cut(s) 220, 1024
TseI GCWGC 2 cut(s) 583, 977
Tsp45I GTSAC 2 cut(s) 220, 1024
TspGWI ACGGA 3 cut(s) 79, 675, 1054
TspRI CASTG 5 cut(s) 106, 229, 511, 709, 976
VpaK11BI GGWCC 2 cut(s) 33, 806
XceI RCATGY 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 1119
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 279, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.