Prupe.2G172800_v2.0.a1

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001137
Physical Location & Seq
Forward (+)
21937118 .. 21941053
3936 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G172800.1

Sequence Viewer

Length: 1125 bp
ATGGCGGCCTTGAGGAGCTTTCTGAAGAAAAGATCCACTTTGCTCTGCAATGAAGCCGTGAGAAAGAGACTCTTCTCAACCCAAGTGAGCCAACCCATCATTGATTCTCCATCTTTTGCTCAGAGGGTCAGAAACCTTCCTAAGGATCTTCCTGGAACCCACGTCAAAACAGAAGTCTCCCAACTCATTGGTAGAACTCCCATTGTCTATCTCAACAAAGTCACTGAAGGATGTGGAGCTTATATAGCTGTCAAGCAAGAGATGTTTCAACCCACCTCTAGCATCAAAGACAGACCAGCACTTTCAATGATCAACGATGCAGAAAAGAAAGGCTTGATAACTCCTGGCAAGACAGTACTGGTGGAGCCAACATCAGGAAATATGGGAATCAGCATGGCTTTTATGGCAGCCATGAGAGGGTATAAAATGGTTCTCACTATGCCGTCTTACACAAGCTTGGAGAGAAGGGTGTGTATGAGAGCCTTTGGAGCTGAATTAATTCTCACTGATCCAGCCAGGGGGATGGGAGGAACTGTTAAGAAGGCTTATGATCTTCTGGAATCCACACCAAATGCTCATATGCTCCAACAGTTCTCAAATCCTGCCAATACTCGGGTGCATTTCGAAACTACAGGCCCTGAGATATGGGAGGATACCGATGGGCAAGTTGACATCTTCATAATGGGAATTGGTAGCGGAGGCACAGTCTCTGGGGTTGGGCAGTATCTCAAATCCAAAAATCCCAATGTTCAGATATATGGAGTGGAGCCTGCTGAAAGTAATGTGCTAAACGGTGGCAAACCAGGTCCTCATTTGATCACTGGCAACGGGGTTGGATTCAAACCAGATATTTTGGACTTGGATGTGATGGATAGAGTTATTGAGGTTAAAAGTGATGATGCAGTAAAAATGGCAAGACGATTGGCATTGGAAGAGGGACTTATGGTAGGAATATCATCCGGAGCCAACACGGTGGCAGCAATTGAGCTTGCTAAAAAGCCAGAAAACAAAGGCAAACTTATTGTGACCGTTCACCCAAGTTTCGGGGAGCGATACTTGTCATCTGTCCTGTTTGAAGAGCTGAGGAAGGAAGCTGAAAACATGCAACCGGTCTCAGTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

375

Amino Acids

40.69

Weight (kDa)

8.78

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1119
AccIII TCCGGA 1 cut(s) 959
AciI CCGC 2 cut(s) 5, 696
AclWI GGATC 3 cut(s) 27, 153, 503
AcuI CTGAAG 2 cut(s) 44, 246
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 6 cut(s) 142, 374, 417, 518, 612, 1043
AgeI ACCGGT 1 cut(s) 1108
AgsI TTSAA 4 cut(s) 269, 306, 841, 1076
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 4 cut(s) 151, 343, 515, 802
AluBI AGCT 8 cut(s) 18, 239, 248, 456, 491, 988, 1081, 1094
AluI AGCT 8 cut(s) 18, 239, 248, 456, 491, 988, 1081, 1094
Alw26I GTCTC 4 cut(s) 61, 181, 712, 1117
AlwI GGATC 3 cut(s) 27, 153, 503
AlwNI CAGNNNCTG 2 cut(s) 638, 710
Ama87I CYCGRG 1 cut(s) 612
Aor13HI TCCGGA 1 cut(s) 959
AoxI GGCC 2 cut(s) 6, 634
ApeKI GCWGC 2 cut(s) 407, 977
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AseI ATTAAT 1 cut(s) 497
AsiGI ACCGGT 1 cut(s) 1108
Asp700I GAANNNNTTC 1 cut(s) 498
AspS9I GGNCC 2 cut(s) 635, 806
AsuHPI GGTGA 1 cut(s) 1025
AsuII TTCGAA 1 cut(s) 624
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 1 cut(s) 806
AxyI CCTNAGG 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 1082
BbvI GCAGC 2 cut(s) 419, 989
BccI CCATC 5 cut(s) 104, 118, 517, 653, 862
BceAI ACGGC 2 cut(s) 41, 427
BciT130I CCWGG 4 cut(s) 153, 345, 517, 804
BciVI GTATCC 1 cut(s) 646
BclI TGATCA 2 cut(s) 309, 816
BcoDI GTCTC 4 cut(s) 61, 181, 712, 1117
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 630
BfuI GTATCC 1 cut(s) 646
BisI GCNGC 3 cut(s) 6, 408, 978
BlsI GCNGC 3 cut(s) 7, 409, 979
BmcAI AGTACT 1 cut(s) 357
Bme1390I CCNGG 4 cut(s) 153, 345, 517, 804
Bme18I GGWCC 1 cut(s) 806
BmeT110I CYCGRG 1 cut(s) 612
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 635, 806
BmiI GGNNCC 4 cut(s) 157, 366, 768, 964
BmrFI CCNGG 4 cut(s) 153, 345, 517, 804
BmsI GCATC 3 cut(s) 291, 307, 889
Bpu10I CCTNAGC 1 cut(s) 1082
Bpu14I TTCGAA 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 1117
BsaJI CCNNGG 1 cut(s) 516
BsaWI WCCGGW 2 cut(s) 959, 1108
BsaXI ACNNNNNCTCC 4 cut(s) 519, 549, 690, 720
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 374, 417, 518, 612, 1043
Bse118I RCCGGY 1 cut(s) 1108
Bse1I ACTGG 2 cut(s) 363, 826
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 959
BseBI CCWGG 4 cut(s) 153, 345, 517, 804
BseDI CCNNGG 1 cut(s) 516
BseGI GGATG 4 cut(s) 236, 528, 868, 956
BseLI CCNNNNNNNGG 6 cut(s) 142, 374, 417, 518, 612, 1043
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 134, 630, 1073
BseNI ACTGG 2 cut(s) 363, 826
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 419, 989
BshFI GGCC 2 cut(s) 8, 636
BshTI ACCGGT 1 cut(s) 1108
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 2 cut(s) 960, 1109
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 6 cut(s) 142, 374, 417, 518, 612, 1043
BsmAI GTCTC 4 cut(s) 61, 181, 712, 1117
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 2 cut(s) 8, 636
Bso31I GGTCTC 1 cut(s) 1117
BsoBI CYCGRG 1 cut(s) 612
Bsp119I TTCGAA 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 959
Bsp143I GATC 6 cut(s) 32, 145, 309, 508, 550, 816
BspACI CCGC 2 cut(s) 5, 696
BspANI GGCC 2 cut(s) 8, 636
BspCNI CTCAG 3 cut(s) 133, 631, 1074
BspEI TCCGGA 1 cut(s) 959
BspLI GGNNCC 4 cut(s) 157, 366, 768, 964
BspPI GGATC 3 cut(s) 27, 153, 503
BspQI GCTCTTC 1 cut(s) 1071
BspT104I TTCGAA 1 cut(s) 624
BspTNI GGTCTC 1 cut(s) 1117
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 1108
BsrI ACTGG 2 cut(s) 363, 826
BssAI RCCGGY 1 cut(s) 1108
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 6 cut(s) 32, 145, 309, 508, 550, 816
Bst2UI CCWGG 4 cut(s) 153, 345, 517, 804
Bst4CI ACNGT 7 cut(s) 355, 535, 591, 706, 794, 973, 1030
Bst6I CTCTTC 3 cut(s) 77, 927, 1071
BstBI TTCGAA 1 cut(s) 624
BstC8I GCNNGC 2 cut(s) 771, 990
BstDEI CTNAG 5 cut(s) 120, 141, 639, 1082, 1114
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 236, 528, 868, 956
BstKTI GATC 6 cut(s) 35, 148, 312, 511, 553, 819
BstMAI GTCTC 4 cut(s) 61, 181, 712, 1117
BstMBI GATC 6 cut(s) 32, 145, 309, 508, 550, 816
BstMWI GCNNNNNNNGC 3 cut(s) 245, 404, 488
BstNI CCWGG 4 cut(s) 153, 345, 517, 804
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 4 cut(s) 151, 343, 515, 802
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 419, 989
BstX2I RGATCY 2 cut(s) 32, 145
BstXI CCANNNNNNTGG 3 cut(s) 188, 523, 973
BstYI RGATCY 2 cut(s) 32, 145
Bsu36I CCTNAGG 1 cut(s) 141
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 2 cut(s) 8, 636
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 4 cut(s) 236, 528, 868, 956
BtsIMutI CAGTG 3 cut(s) 222, 504, 819
Cac8I GCNNGC 2 cut(s) 771, 990
CaiI CAGNNNCTG 2 cut(s) 638, 710
Cfr10I RCCGGY 1 cut(s) 1108
Cfr13I GGNCC 2 cut(s) 635, 806
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 1 cut(s) 356
CspAI ACCGGT 1 cut(s) 1108
CviAII CATG 3 cut(s) 394, 412, 1102
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 5 cut(s) 120, 141, 639, 1082, 1114
DpnI GATC 6 cut(s) 34, 147, 311, 510, 552, 818
DpnII GATC 6 cut(s) 32, 145, 309, 508, 550, 816
Eam1104I CTCTTC 3 cut(s) 77, 927, 1071
EarI CTCTTC 3 cut(s) 77, 927, 1071
Eco31I GGTCTC 1 cut(s) 1117
Eco47I GGWCC 1 cut(s) 806
Eco57I CTGAAG 2 cut(s) 44, 246
Eco81I CCTNAGG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 612
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 2 cut(s) 635, 806
EcoRII CCWGG 4 cut(s) 151, 343, 515, 802
FaeI CATG 3 cut(s) 397, 415, 1105
FaqI GGGAC 1 cut(s) 951
FatI CATG 3 cut(s) 393, 411, 1101
FauNDI CATATG 1 cut(s) 579
FbaI TGATCA 2 cut(s) 309, 816
FblI GTMKAC 1 cut(s) 1119
Fnu4HI GCNGC 3 cut(s) 6, 408, 978
FokI GGATG 4 cut(s) 243, 535, 875, 943
Fsp4HI GCNGC 3 cut(s) 6, 408, 978
FspBI CTAG 1 cut(s) 279
GluI GCNGC 3 cut(s) 6, 408, 978
HaeIII GGCC 2 cut(s) 8, 636
HapII CCGG 2 cut(s) 960, 1109
Hin1II CATG 3 cut(s) 397, 415, 1105
HincII GTYRAC 2 cut(s) 670, 1120
HindII GTYRAC 2 cut(s) 670, 1120
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 5 cut(s) 69, 104, 387, 560, 837
HpaII CCGG 2 cut(s) 960, 1109
HphI GGTGA 1 cut(s) 1025
Hpy166II GTNNAC 3 cut(s) 670, 1033, 1120
Hpy188I TCNGA 4 cut(s) 24, 123, 131, 753
Hpy188III TCNNGA 3 cut(s) 375, 557, 960
Hpy8I GTNNAC 3 cut(s) 670, 1033, 1120
HpyAV CCTTC 5 cut(s) 146, 221, 459, 535, 1081
HpyCH4III ACNGT 7 cut(s) 355, 535, 591, 706, 794, 973, 1030
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 48, 320, 619, 902, 1105
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 404, 488
HpyF3I CTNAG 5 cut(s) 120, 141, 639, 1082, 1114
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 397, 415, 1105
Kpn2I TCCGGA 1 cut(s) 959
Ksp22I TGATCA 2 cut(s) 309, 816
Kzo9I GATC 6 cut(s) 32, 145, 309, 508, 550, 816
LguI GCTCTTC 1 cut(s) 1071
LmnI GCTCC 8 cut(s) 15, 236, 364, 488, 588, 766, 962, 1048
Lsp1109I GCAGC 2 cut(s) 419, 989
LweI GCATC 3 cut(s) 291, 307, 889
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 220, 1024
MalI GATC 6 cut(s) 34, 147, 311, 510, 552, 818
MboI GATC 6 cut(s) 32, 145, 309, 508, 550, 816
MboII GAAGA 7 cut(s) 37, 64, 140, 545, 667, 944, 1088
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 2 cut(s) 32, 145
MluCI AATT 4 cut(s) 494, 498, 687, 981
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 2 cut(s) 610, 814
MroI TCCGGA 1 cut(s) 959
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 3 cut(s) 497, 537, 888
MspI CCGG 2 cut(s) 960, 1109
MspR9I CCNGG 4 cut(s) 153, 345, 517, 804
MunI CAATTG 1 cut(s) 981
MvaI CCWGG 4 cut(s) 153, 345, 517, 804
MwoI GCNNNNNNNGC 3 cut(s) 245, 404, 488
NdeI CATATG 1 cut(s) 579
NdeII GATC 6 cut(s) 32, 145, 309, 508, 550, 816
NlaIII CATG 3 cut(s) 397, 415, 1105
NlaIV GGNNCC 4 cut(s) 157, 366, 768, 964
NmuCI GTSAC 2 cut(s) 220, 1024
NspI RCATGY 1 cut(s) 1105
NspV TTCGAA 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 1071
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 4 cut(s) 104, 387, 560, 837
PfoI TCCNGGA 1 cut(s) 151
PinAI ACCGGT 1 cut(s) 1108
PkrI GCNGC 3 cut(s) 7, 409, 979
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 806
PshBI ATTAAT 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 4 cut(s) 151, 343, 515, 802
PspGI CCWGG 4 cut(s) 151, 343, 515, 802
PspN4I GGNNCC 4 cut(s) 157, 366, 768, 964
PspPI GGNCC 2 cut(s) 635, 806
PspPPI RGGWCCY 1 cut(s) 806
PstNI CAGNNNCTG 2 cut(s) 638, 710
PsuI RGATCY 2 cut(s) 32, 145
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SalI GTCGAC 1 cut(s) 1118
SapI GCTCTTC 1 cut(s) 1071
SaqAI TTAA 3 cut(s) 497, 537, 888
SatI GCNGC 3 cut(s) 6, 408, 978
Sau3AI GATC 6 cut(s) 32, 145, 309, 508, 550, 816
Sau96I GGNCC 2 cut(s) 635, 806
ScaI AGTACT 1 cut(s) 357
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 4 cut(s) 153, 345, 517, 804
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 3 cut(s) 291, 307, 889
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 624
SinI GGWCC 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 4 cut(s) 494, 498, 687, 981
SsiI CCGC 2 cut(s) 5, 696
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 4 cut(s) 151, 343, 515, 802
TaaI ACNGT 7 cut(s) 355, 535, 591, 706, 794, 973, 1030
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 624, 1119
TasI AATT 4 cut(s) 494, 498, 687, 981
TatI WGTACW 1 cut(s) 355
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 104, 387, 560, 837
Tru1I TTAA 3 cut(s) 497, 537, 888
Tru9I TTAA 3 cut(s) 497, 537, 888
TscAI CASTG 3 cut(s) 229, 511, 826
TseFI GTSAC 2 cut(s) 220, 1024
TseI GCWGC 2 cut(s) 407, 977
Tsp45I GTSAC 2 cut(s) 220, 1024
TspDTI ATGAA 2 cut(s) 66, 667
TspRI CASTG 3 cut(s) 229, 511, 826
VpaK11BI GGWCC 1 cut(s) 806
VspI ATTAAT 1 cut(s) 497
XagI CCTNNNNNAGG 1 cut(s) 140
XceI RCATGY 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 1119
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.