RchiOBHm_Chr5g0054831

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001137
Physical Location & Seq
Reverse (-)
57533604 .. 57534409
806 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33190

Sequence Viewer

Length: 354 bp
ATGGGAGGAACTGTTAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATACTCCAACAATTCTCAAACCCCGCTAATACTCAGGACCTGAGATATGGTGACACCTTTGTAATGGGAATTGGTAGAGGAGGCACCATCTCTTGGGTTGGACAGTATCTCAAATCTCAAAATCCTGATTGTAAGAGATATGGAGTGGAGCCTGGTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGCAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACAAAATGGAAAGAGTACTTGAGCGTATATATGCCTTTTATATGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

117

Amino Acids

12.83

Weight (kDa)

7.82

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 6 - 113 2e-08 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 150
AciI CCGC 1 cut(s) 81
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 2 cut(s) 208, 244
AlwNI CAGNNNCTG 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 94, 248
AsuHPI GGTGA 2 cut(s) 119, 224
AvaII GGWCC 2 cut(s) 94, 248
BanI GGYRCC 1 cut(s) 140
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 210, 246
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 210, 246
Bme18I GGWCC 2 cut(s) 94, 248
BmgT120I GGNCC 2 cut(s) 94, 248
BmiI GGNNCC 2 cut(s) 142, 207
BmrFI CCNGG 2 cut(s) 210, 246
BpuEI CTTGAG 1 cut(s) 344
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 274
BseBI CCWGG 2 cut(s) 210, 246
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 89, 104
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 150
BspACI CCGC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 90, 103
BspLI GGNNCC 2 cut(s) 142, 207
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 210, 246
Bst4CI ACNGT 2 cut(s) 13, 162
BstDEI CTNAG 2 cut(s) 90, 98
BstNI CCWGG 2 cut(s) 210, 246
BstSCI CCNGG 2 cut(s) 208, 244
BstXI CCANNNNNNTGG 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 94, 248
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 1 cut(s) 320
CviAII CATG 1 cut(s) 301
CviJI RGCY 3 cut(s) 23, 208, 350
CviKI_1 RGCY 3 cut(s) 23, 208, 350
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 2 cut(s) 90, 98
Eco47I GGWCC 2 cut(s) 94, 248
EcoO109I RGGNCCY 2 cut(s) 94, 248
EcoRII CCWGG 2 cut(s) 208, 244
FaeI CATG 1 cut(s) 304
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 304
HinfI GANTC 2 cut(s) 38, 279
HphI GGTGA 2 cut(s) 119, 224
Hpy166II GTNNAC 1 cut(s) 242
Hpy188III TCNNGA 2 cut(s) 92, 182
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 2 cut(s) 13, 162
HpyF3I CTNAG 2 cut(s) 90, 98
Hsp92II CATG 1 cut(s) 304
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 8 cut(s) 77, 110, 195, 195, 222, 231, 249, 258
MabI ACCWGGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 107
MluCI AATT 2 cut(s) 68, 126
MmeI TCCRAC 3 cut(s) 88, 136, 256
MnlI CCTC 3 cut(s) 128, 131, 261
MseI TTAA 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 210, 246
MvaI CCWGG 2 cut(s) 210, 246
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 142, 207
NmuCI GTSAC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 38, 279
PflMI CCANNNNNTGG 1 cut(s) 150
PpuMI RGGWCCY 2 cut(s) 94, 248
Psp5II RGGWCCY 2 cut(s) 94, 248
Psp6I CCWGG 2 cut(s) 208, 244
PspGI CCWGG 2 cut(s) 208, 244
PspN4I GGNNCC 2 cut(s) 142, 207
PspPI GGNCC 2 cut(s) 94, 248
PspPPI RGGWCCY 2 cut(s) 94, 248
PstNI CAGNNNCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 15
Sau96I GGNCC 2 cut(s) 94, 248
ScaI AGTACT 1 cut(s) 321
ScrFI CCNGG 2 cut(s) 210, 246
SetI ASST 4 cut(s) 33, 99, 116, 250
SexAI ACCWGGT 1 cut(s) 244
SinI GGWCC 2 cut(s) 94, 248
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 2 cut(s) 68, 126
SsiI CCGC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 208, 244
TaaI ACNGT 2 cut(s) 13, 162
TaqI TCGA 1 cut(s) 257
TasI AATT 2 cut(s) 68, 126
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 2 cut(s) 38, 279
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 94, 248
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.