RchiOBHm_Chr7g0222261

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001137
Physical Location & Seq
Forward (+)
43562818 .. 43568021
5204 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19891

Sequence Viewer

Length: 510 bp
ATGTGTATGAGAGCCTTCGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGACGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAAGACTCAGGTACATTCTGAAACTGCAGGACCTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTAATGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAATATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGCTACTTTGTGTATGTGATTTCGCTGACAGTCTTCAACACCAGTGTGCTTCCATTGAATCAAGGAGAGAATGGAGTCAAAATGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

169

Amino Acids

18.14

Weight (kDa)

4.76

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 3 - 140 5.2e-28 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 1 cut(s) 228
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 50, 243
AgsI TTSAA 3 cut(s) 376, 455, 476
AjnI CCWGG 1 cut(s) 337
AleI CACNNNNGTG 1 cut(s) 462
AluBI AGCT 2 cut(s) 23, 421
AluI AGCT 2 cut(s) 23, 421
AlwNI CAGNNNCTG 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 167, 341
AvaII GGWCC 2 cut(s) 167, 341
BanI GGYRCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 443
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 339
BciVI GTATCC 1 cut(s) 178
BfmI CTRYAG 1 cut(s) 162
BfuI GTATCC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 2 cut(s) 167, 341
BmgT120I GGNCC 2 cut(s) 167, 341
BmiI GGNNCC 2 cut(s) 235, 300
BmrFI CCNGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 437
BsaXI ACNNNNNCTCC 4 cut(s) 28, 51, 58, 81
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 243
Bse1I ACTGG 2 cut(s) 361, 460
BseBI CCWGG 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 50, 243
BseMII CTCAG 3 cut(s) 15, 158, 162
BseNI ACTGG 2 cut(s) 361, 460
BshNI GGYRCC 1 cut(s) 233
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 50, 243
BsmFI GGGAC 1 cut(s) 67
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 3 cut(s) 16, 157, 163
BspLI GGNNCC 2 cut(s) 235, 300
BspMAI CTGCAG 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 233
BsrI ACTGG 2 cut(s) 361, 460
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 3 cut(s) 67, 255, 449
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 3 cut(s) 24, 144, 171
BstENI CCTNNNNNAGG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 388
BsuI GTATCC 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 36, 467
Cac8I GCNNGC 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 167, 341
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 394
CviJI RGCY 5 cut(s) 14, 23, 77, 301, 421
CviKI_1 RGCY 5 cut(s) 14, 23, 77, 301, 421
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 3 cut(s) 24, 144, 171
Eco47I GGWCC 2 cut(s) 167, 341
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoO109I RGGNCCY 2 cut(s) 167, 341
EcoRII CCWGG 1 cut(s) 337
FaeI CATG 1 cut(s) 397
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 393
Hin1II CATG 1 cut(s) 397
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 6 cut(s) 31, 92, 142, 372, 476, 493
Hpy166II GTNNAC 2 cut(s) 202, 335
Hpy188I TCNGA 2 cut(s) 20, 157
Hpy188III TCNNGA 2 cut(s) 70, 416
Hpy8I GTNNAC 2 cut(s) 202, 335
HpyAV CCTTC 2 cut(s) 25, 67
HpyCH4III ACNGT 3 cut(s) 67, 255, 449
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 24, 144, 171
Hsp92II CATG 1 cut(s) 397
LmnI GCTCC 3 cut(s) 20, 120, 298
MabI ACCWGGT 1 cut(s) 337
MboII GAAGA 1 cut(s) 443
MluCI AATT 2 cut(s) 122, 219
MlyI GAGTC 2 cut(s) 136, 502
MmeI TCCRAC 3 cut(s) 142, 229, 349
MnlI CCTC 5 cut(s) 53, 54, 175, 224, 354
MroXI GAANNNNTTC 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 20
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 2 cut(s) 235, 300
OliI CACNNNNGTG 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 4 cut(s) 31, 92, 372, 476
PleI GAGTC 2 cut(s) 136, 501
PpsI GAGTC 2 cut(s) 136, 501
PpuMI RGGWCCY 2 cut(s) 167, 341
Psp5II RGGWCCY 2 cut(s) 167, 341
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 235, 300
PspPI GGNCC 2 cut(s) 167, 341
PspPPI RGGWCCY 2 cut(s) 167, 341
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 462
Sau96I GGNCC 2 cut(s) 167, 341
SchI GAGTC 2 cut(s) 136, 502
ScrFI CCNGG 1 cut(s) 339
SetI ASST 6 cut(s) 25, 87, 150, 172, 343, 423
SexAI ACCWGGT 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 167, 341
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 2 cut(s) 122, 219
SsiI CCGC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 3 cut(s) 67, 255, 449
TaqI TCGA 1 cut(s) 350
TasI AATT 2 cut(s) 122, 219
TfiI GAWTC 4 cut(s) 31, 92, 372, 476
TscAI CASTG 2 cut(s) 43, 467
TspRI CASTG 2 cut(s) 43, 467
VpaK11BI GGWCC 2 cut(s) 167, 341
XagI CCTNNNNNAGG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.