Rmu_sc0012929.1_g000002

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012929.1
OG0001137
Physical Location & Seq
Reverse (-)
1849 .. 3150
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012929.1_g000002.1.cds

Sequence Viewer

Length: 438 bp
atgccatcttacacgagcttggagagaagaatgtgtatgagagccttcggagctgagttgattctcactgaccctccaaaagggacgggaggaactgtcaagaaggcttatgaccttttggaatccactccaaatgcccttatgctccaacaattctcaaaccctgccaagactcgggtacattctgaaactgcaggacctgagatatgggaggatactaatggaaaagttgacatctttgtaatgggaattggtagcggaggcaccgtctctggggttggacagtatctcaaatctcaaaaccctgattgtcctcattcgattactggaaatggggttggattcaaacccaatatattggacatggacataatggaaagagttcttgagctacttcgtgtatgtgatttcgctgacagtcttcaacaccagtggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

145

Amino Acids

15.88

Weight (kDa)

5.29

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 1 cut(s) 258
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 3 cut(s) 80, 174, 273
AgsI TTSAA 2 cut(s) 346, 425
AluBI AGCT 3 cut(s) 18, 53, 391
AluI AGCT 3 cut(s) 18, 53, 391
Alw26I GTCTC 1 cut(s) 274
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 263
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 413
BccI CCATC 1 cut(s) 13
BciVI GTATCC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 407
BsaXI ACNNNNNCTCC 6 cut(s) 58, 81, 88, 111, 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 174, 273
Bse1I ACTGG 2 cut(s) 331, 430
BseLI CCNNNNNNNGG 3 cut(s) 80, 174, 273
BseMII CTCAG 2 cut(s) 45, 192
BseNI ACTGG 2 cut(s) 331, 430
BshNI GGYRCC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 80, 174, 273
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 174
BspACI CCGC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 46, 193
BspLI GGNNCC 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 2 cut(s) 331, 430
BssSI CACGAG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 4 cut(s) 97, 268, 285, 419
BstDEI CTNAG 2 cut(s) 54, 201
BstENI CCTNNNNNAGG 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 413
BstXI CCANNNNNNTGG 1 cut(s) 358
BsuI GTATCC 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 66, 437
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 179
CspCI CAANNNNNGTGG 1 cut(s) 413
CviAII CATG 1 cut(s) 364
CviJI RGCY 5 cut(s) 18, 44, 53, 107, 391
CviKI_1 RGCY 5 cut(s) 18, 44, 53, 107, 391
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 2 cut(s) 54, 201
Eco47I GGWCC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 174
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 197
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 1 cut(s) 367
FaiI YATR 8 cut(s) 38, 111, 143, 208, 356, 365, 371, 403
FaqI GGGAC 1 cut(s) 97
FatI CATG 1 cut(s) 363
Hin1II CATG 1 cut(s) 367
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 4 cut(s) 61, 122, 172, 342
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 50, 187
Hpy188III TCNNGA 2 cut(s) 100, 386
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 55, 97
HpyCH4III ACNGT 4 cut(s) 97, 268, 285, 419
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 54, 201
Hsp92II CATG 1 cut(s) 367
LmnI GCTCC 2 cut(s) 50, 150
LpnPI CCDG 6 cut(s) 177, 180, 213, 258, 312, 318
MboII GAAGA 2 cut(s) 39, 413
MluCI AATT 2 cut(s) 152, 249
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 3 cut(s) 172, 259, 319
MnlI CCTC 5 cut(s) 83, 84, 205, 254, 324
MroXI GAANNNNTTC 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 61, 122, 342
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 166
SetI ASST 5 cut(s) 20, 55, 117, 202, 393
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 152, 249
SsiI CCGC 1 cut(s) 258
TaaI ACNGT 4 cut(s) 97, 268, 285, 419
TaqI TCGA 1 cut(s) 320
TasI AATT 2 cut(s) 152, 249
TfiI GAWTC 3 cut(s) 61, 122, 342
TscAI CASTG 2 cut(s) 73, 437
TspRI CASTG 2 cut(s) 73, 437
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.