Rroxscaffold_1G00026260

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001137
Physical Location & Seq
Forward (+)
33065750 .. 33070345
4596 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00026260.1

Sequence Viewer

Length: 297 bp
ATGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAATACCCTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGCAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGTGAGTAATAGGTCCTCATTCGATTACTGGCAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

98

Amino Acids

10.63

Weight (kDa)

6.24

Isoelectric Point (pI)

23.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 2 - 77 9.5e-11 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 2 cut(s) 163, 254
AjnI CCWGG 1 cut(s) 124
Asp700I GAANNNNTTC 2 cut(s) 198, 289
AspS9I GGNCC 2 cut(s) 128, 219
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 2 cut(s) 128, 219
BanI GGYRCC 1 cut(s) 20
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 128, 219
BmgT120I GGNCC 2 cut(s) 128, 219
BmiI GGNNCC 2 cut(s) 22, 87
BmrFI CCNGG 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 148, 239
Bse3DI GCAATG 2 cut(s) 154, 245
BseBI CCWGG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 2 cut(s) 154, 245
BseNI ACTGG 2 cut(s) 148, 239
BshNI GGYRCC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 30
BspACI CCGC 1 cut(s) 15
BspLI GGNNCC 2 cut(s) 22, 87
BspT107I GGYRCC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 154, 245
BsrI ACTGG 2 cut(s) 148, 239
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstXI CCANNNNNNTGG 2 cut(s) 175, 266
Cac8I GCNNGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 128, 219
CsiI ACCWGGT 1 cut(s) 124
CviAII CATG 2 cut(s) 181, 272
CviJI RGCY 1 cut(s) 88
CviKI_1 RGCY 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 128, 219
EcoO109I RGGNCCY 2 cut(s) 128, 219
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 184, 275
FaiI YATR 9 cut(s) 76, 78, 107, 173, 182, 188, 264, 273, 279
FatI CATG 2 cut(s) 180, 271
Hin1II CATG 2 cut(s) 184, 275
HinfI GANTC 2 cut(s) 159, 250
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 203, 294
Hpy8I GTNNAC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 42
Hsp92II CATG 2 cut(s) 184, 275
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 15, 75, 102, 111, 129, 138, 220
MabI ACCWGGT 1 cut(s) 124
MluCI AATT 1 cut(s) 6
MmeI TCCRAC 3 cut(s) 16, 136, 227
MnlI CCTC 4 cut(s) 11, 141, 199, 232
MroXI GAANNNNTTC 2 cut(s) 198, 289
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
NlaIII CATG 2 cut(s) 184, 275
NlaIV GGNNCC 2 cut(s) 22, 87
PdmI GAANNNNTTC 2 cut(s) 198, 289
PfeI GAWTC 2 cut(s) 159, 250
PpuMI RGGWCCY 2 cut(s) 128, 219
Psp5II RGGWCCY 2 cut(s) 128, 219
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 22, 87
PspPI GGNCC 2 cut(s) 128, 219
PspPPI RGGWCCY 2 cut(s) 128, 219
Sau96I GGNCC 2 cut(s) 128, 219
ScrFI CCNGG 1 cut(s) 126
SetI ASST 3 cut(s) 130, 210, 221
SexAI ACCWGGT 1 cut(s) 124
SinI GGWCC 2 cut(s) 128, 219
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 137, 228
TasI AATT 1 cut(s) 6
TfiI GAWTC 2 cut(s) 159, 250
VpaK11BI GGWCC 2 cut(s) 128, 219
XmnI GAANNNNTTC 2 cut(s) 198, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.