pycom01g09490

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
10386954 .. 10388239
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09490.4

Sequence Viewer

Length: 546 bp
ATGCTCCAACAATTCTCAAATCCCGCCAATACTAAGGTGCATTTTGAAACTACAGGCCCTGAGATATGGGAGGATACCAACGGACAAGTTGACATCTTCGTAATGGGAATTGGTAGCGGAGGCACTGTCTCCGGGGTCGGGCAGTATCTCAAATCTAAAAATCCTAATGTTCAGATATACGGAGTGGAGCCTGCTGAAAGTAATGTGCTGAATGGCGGTAAACCAGGTCCTCATTCAATCACGGGCAACGGGGTTGGATTCAAACCAGATATATTGGACATGGATGTGATGGAAAGAGTGATTGAGGTTCGTAGCGAAGATGCAGTAAACATGGCAAGACAATTGGCACTGAAAGAAGGGCTTATGGTGGGAATATCGTCTGGAGCCAACACAGTGGCAGCAATGGAGCTTGCTAAAAAGCCAGAAAACAAAGGCAAACTCATTGTGACTGTTCATGCAAGCTTTGGGGAGCGATACTTGTCATCTGTTCTATTTCAAGACCTGAGGCAGGAAGCCGAAAACATGCAACCAGTTGCAGTCGACTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

19.43

Weight (kDa)

4.98

Isoelectric Point (pI)

20.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 540
AciI CCGC 3 cut(s) 24, 117, 216
AfiI CCNNNNNNNGG 2 cut(s) 138, 508
AgsI TTSAA 4 cut(s) 47, 237, 262, 497
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 409, 462
AluI AGCT 2 cut(s) 409, 462
Alw26I GTCTC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 56, 227
AsuC2I CCSGG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 227
AxyI CCTNAGG 1 cut(s) 503
BbvI GCAGC 1 cut(s) 410
BccI CCATC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 51
BfuI GTATCC 1 cut(s) 67
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 2 cut(s) 133, 225
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 56, 227
BmiI GGNNCC 2 cut(s) 189, 385
BmrFI CCNGG 2 cut(s) 133, 225
BmsI GCATC 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 508
Bse1I ACTGG 1 cut(s) 530
Bse21I CCTNAGG 1 cut(s) 503
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 138, 508
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 51, 494
BseNI ACTGG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 410
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 138, 508
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 57
BspACI CCGC 3 cut(s) 24, 117, 216
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 52, 495
BspLI GGNNCC 2 cut(s) 189, 385
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 127, 394, 451
BstC8I GCNNGC 3 cut(s) 192, 411, 460
BstDEI CTNAG 3 cut(s) 33, 60, 503
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 1 cut(s) 289
BstMAI GTCTC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 2 cut(s) 131, 223
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 410
BstXI CCANNNNNNTGG 1 cut(s) 394
Bsu36I CCTNAGG 1 cut(s) 503
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 123, 347, 399
Cac8I GCNNGC 3 cut(s) 192, 411, 460
CaiI CAGNNNCTG 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 56, 227
CsiI ACCWGGT 1 cut(s) 223
CviAII CATG 4 cut(s) 280, 331, 455, 523
CviJI RGCY 8 cut(s) 57, 190, 361, 386, 409, 421, 462, 515
CviKI_1 RGCY 8 cut(s) 57, 190, 361, 386, 409, 421, 462, 515
DdeI CTNAG 3 cut(s) 33, 60, 503
Eco47I GGWCC 1 cut(s) 227
Eco81I CCTNAGG 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoO109I RGGNCCY 2 cut(s) 56, 227
EcoRII CCWGG 1 cut(s) 223
FaeI CATG 4 cut(s) 283, 334, 458, 526
FaiI YATR 8 cut(s) 67, 178, 272, 281, 332, 365, 456, 524
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 4 cut(s) 279, 330, 454, 522
FauI CCCGC 1 cut(s) 31
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 399
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 132
Hin1II CATG 4 cut(s) 283, 334, 458, 526
HincII GTYRAC 2 cut(s) 91, 541
HindII GTYRAC 2 cut(s) 91, 541
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 1 cut(s) 258
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 4 cut(s) 91, 221, 328, 541
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 2 cut(s) 381, 497
Hpy8I GTNNAC 4 cut(s) 91, 221, 328, 541
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 3 cut(s) 127, 394, 451
HpyCH4V TGCA 5 cut(s) 40, 323, 458, 526, 536
HpyF3I CTNAG 3 cut(s) 33, 60, 503
Hsp92II CATG 4 cut(s) 283, 334, 458, 526
LmnI GCTCC 5 cut(s) 9, 187, 383, 406, 469
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 310
MabI ACCWGGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 445
MboII GAAGA 2 cut(s) 88, 329
MfeI CAATTG 1 cut(s) 341
MluCI AATT 3 cut(s) 11, 108, 341
MmeI TCCRAC 2 cut(s) 31, 235
MnlI CCTC 5 cut(s) 64, 113, 240, 298, 498
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 133, 225
MunI CAATTG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 225
NciI CCSGG 1 cut(s) 133
NlaIII CATG 4 cut(s) 283, 334, 458, 526
NlaIV GGNNCC 2 cut(s) 189, 385
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 526
PfeI GAWTC 1 cut(s) 258
PkrI GCNGC 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 189, 385
PspPI GGNCC 2 cut(s) 56, 227
PspPPI RGGWCCY 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 284
SalI GTCGAC 1 cut(s) 539
SatI GCNGC 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 56, 227
ScrFI CCNGG 2 cut(s) 133, 225
SetI ASST 6 cut(s) 39, 229, 309, 411, 464, 504
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 3 cut(s) 11, 108, 341
SsiI CCGC 3 cut(s) 24, 117, 216
StyD4I CCNGG 2 cut(s) 131, 223
TaaI ACNGT 3 cut(s) 127, 394, 451
TaqI TCGA 1 cut(s) 540
TasI AATT 3 cut(s) 11, 108, 341
TfiI GAWTC 1 cut(s) 258
TscAI CASTG 3 cut(s) 130, 354, 399
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 443
TspGWI ACGGA 2 cut(s) 96, 195
TspRI CASTG 3 cut(s) 130, 354, 399
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 506
XceI RCATGY 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.