Rroxscaffold_1G00032060

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001137
Physical Location & Seq
Reverse (-)
45530852 .. 45536012
5161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032060.1

Sequence Viewer

Length: 348 bp
ATGCTGCATATGTGTCATTCAGAGATGCTTATACTCTTGAAACTGCTGTTTTATTCAGTATGCTCGAAACTACAGGATCTGAGATATGGTGACATCTTTGTAACGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGCGGTAAACCAGGTCCTCATTCGATTACTAGCAGTGGGGTTGGATTCAAACCCAATATATTGGGCATGTTGAGCTACTTTGTATATGTGATTTTGCTGACAAAGTCTTCAACAGTGGTGGCAACTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

115

Amino Acids

12.35

Weight (kDa)

8.46

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 31 - 85 1.9e-10 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AciI CCGC 2 cut(s) 117, 219
AclWI GGATC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 3 cut(s) 40, 265, 327
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
AlwI GGATC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 315
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 124, 189
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 132
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 2 cut(s) 117, 219
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 124, 189
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 122
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 144, 331
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 80
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 256, 336
Cac8I GCNNGC 1 cut(s) 192
CaiI CAGNNNCTG 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 230
CsiI ACCWGGT 1 cut(s) 226
CspCI CAANNNNNGTGG 1 cut(s) 315
CviAII CATG 1 cut(s) 283
CviJI RGCY 2 cut(s) 190, 291
CviKI_1 RGCY 2 cut(s) 190, 291
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 226
FaeI CATG 1 cut(s) 286
FatI CATG 1 cut(s) 282
FauNDI CATATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 5
Hin1II CATG 1 cut(s) 286
HinfI GANTC 1 cut(s) 261
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 22, 81
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 144, 331
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 1 cut(s) 286
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 59, 117, 177, 204, 213, 240
LweI GCATC 1 cut(s) 15
MabI ACCWGGT 1 cut(s) 226
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 89, 100
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 315
MflI RGATCY 1 cut(s) 76
MluCI AATT 1 cut(s) 108
MmeI TCCRAC 2 cut(s) 118, 238
MnlI CCTC 2 cut(s) 113, 243
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeI CATATG 1 cut(s) 9
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 2 cut(s) 124, 189
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 286
PfeI GAWTC 1 cut(s) 261
PflFI GACNNNGTC 1 cut(s) 319
PkrI GCNGC 1 cut(s) 6
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 124, 189
PspPI GGNCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 76
PsyI GACNNNGTC 1 cut(s) 319
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 228
SetI ASST 2 cut(s) 232, 293
SexAI ACCWGGT 1 cut(s) 226
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 230
Sse9I AATT 1 cut(s) 108
SsiI CCGC 2 cut(s) 117, 219
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 144, 331
TaqI TCGA 2 cut(s) 65, 239
TasI AATT 1 cut(s) 108
TfiI GAWTC 1 cut(s) 261
TscAI CASTG 2 cut(s) 256, 336
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 89
TspRI CASTG 2 cut(s) 256, 336
Tth111I GACNNNGTC 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 230
XceI RCATGY 1 cut(s) 286
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.