Rh1BG231800

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001137
Physical Location & Seq
Forward (+)
35443410 .. 35447185
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG231800.1

Sequence Viewer

Length: 1125 bp
ATGGCGTCTTTGACGAGCTTTCTGAAGAAAAGATCCACTCTTTCTGTGTGCAATGAAGCCCTGAGAATGAAGAGACTCTTCTCCACTGCACAACCCATCGCTGATTCTTCTTCTTTTGTTGAAAGGATCAGAAATCTCCCTAAAGCTCTTCCTGGAACCCACATCAAAACTGAAGTCTCCCAACTTATTGGTAGAACACCCCTTGTATACCTGAACAAAGTCACTGAAGGCTGTGGAGCTTATATTGCTGTCAAGCAGGAGATGTTTCAGCCCACTGCCAGCATCAAAGACAGACCAGCGCTTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTGATAACTCCTGGAGTGACAACTCTGATAGAGCCAACATCAGGAAACATGGGAATCAGCATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACAAGCTTGGAGAGAAGAGTGTGTATGAGAGCCTTCGGAGCTGAGTTGATTCTCACTGACCCTACAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTGGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAATCCTGCCAATACTCAGGTACATTTTGAAACTACAGGACCTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTCATGGGAATTGGTAGCGGAGGCACTGTCTCAGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAAGATATATGGAGTTGAGCCTGCTGAAAGTAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCGATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGTTAGAAGTGAAGATGCAGTAAATATGGCAAGGCAATTGGCACTGAAAGAAGGACTTTTGGTAGGGATATCATCTGGAGCCAACACAGTGGCAGCCCTTGAGCTCGCAAAAAAGCCAGAAAACAAAGGCAAACTTATAGTGACAATTCATGCAAGTTTCGGAGAGCGATACTTGTCGTCTGTCCTATTTGAAGAGCTAAGGAAGGAAGCTGAAAACATGCAGCCAGTCTCAGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

374

Amino Acids

40.49

Weight (kDa)

8.2

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 59 - 345 2.5e-73 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 442, 677
AccI GTMKAC 1 cut(s) 207
AciI CCGC 2 cut(s) 408, 696
AclWI GGATC 2 cut(s) 27, 134
AcoI YGGCCR 1 cut(s) 405
AcuI CTGAAG 3 cut(s) 44, 192, 246
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 422, 618
AfeI AGCGCT 1 cut(s) 300
AfiI CCNNNNNNNGG 2 cut(s) 374, 518
AgsI TTSAA 5 cut(s) 122, 313, 626, 841, 1076
AjnI CCWGG 3 cut(s) 151, 343, 802
AluBI AGCT 8 cut(s) 18, 146, 239, 456, 491, 988, 1081, 1094
AluI AGCT 8 cut(s) 18, 146, 239, 456, 491, 988, 1081, 1094
Alw21I GWGCWC 1 cut(s) 990
Alw26I GTCTC 4 cut(s) 67, 181, 712, 1117
AlwI GGATC 2 cut(s) 27, 134
AlwNI CAGNNNCTG 1 cut(s) 638
Aor51HI AGCGCT 1 cut(s) 300
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 977, 1105
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
Asp700I GAANNNNTTC 1 cut(s) 876
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 635, 806
AvaII GGWCC 2 cut(s) 635, 806
BanII GRGCYC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 990
BbvI GCAGC 2 cut(s) 989, 1117
BccI CCATC 3 cut(s) 104, 421, 517
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 3 cut(s) 153, 345, 804
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 4 cut(s) 67, 181, 712, 1117
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 302
BfuI GTATCC 1 cut(s) 646
BisI GCNGC 3 cut(s) 408, 978, 1106
BlsI GCNGC 3 cut(s) 409, 979, 1107
Bme1390I CCNGG 3 cut(s) 153, 345, 804
Bme18I GGWCC 2 cut(s) 635, 806
BmgT120I GGNCC 2 cut(s) 635, 806
BmiI GGNNCC 2 cut(s) 157, 964
BmrFI CCNGG 3 cut(s) 153, 345, 804
BmsI GCATC 3 cut(s) 291, 307, 889
BpmI CTGGAG 2 cut(s) 366, 981
Bpu10I CCTNAGC 1 cut(s) 1082
BpuEI CTTGAG 2 cut(s) 902, 1004
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 4 cut(s) 519, 549, 690, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 518
Bse1I ACTGG 2 cut(s) 826, 1109
Bse3DI GCAATG 2 cut(s) 58, 417
BseBI CCWGG 3 cut(s) 153, 345, 804
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 2 cut(s) 374, 518
BseMI GCAATG 2 cut(s) 58, 417
BseMII CTCAG 5 cut(s) 53, 483, 626, 630, 723
BseNI ACTGG 2 cut(s) 826, 1109
BseXI GCAGC 2 cut(s) 989, 1117
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 990
BslI CCNNNNNNNGG 2 cut(s) 374, 518
BsmAI GTCTC 4 cut(s) 67, 181, 712, 1117
BsnI GGCC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 990
Bsp143I GATC 2 cut(s) 32, 126
BspACI CCGC 2 cut(s) 408, 696
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 5 cut(s) 54, 484, 625, 631, 722
BspLI GGNNCC 2 cut(s) 157, 964
BspPI GGATC 2 cut(s) 27, 134
BspQI GCTCTTC 2 cut(s) 153, 1071
BsrDI GCAATG 2 cut(s) 58, 417
BsrI ACTGG 2 cut(s) 826, 1109
BssMI GATC 2 cut(s) 32, 126
BssNAI GTATAC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 208
Bst2UI CCWGG 3 cut(s) 153, 345, 804
Bst4CI ACNGT 4 cut(s) 535, 706, 723, 973
Bst6I CTCTTC 5 cut(s) 65, 83, 153, 460, 1071
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 280, 303, 771, 990
BstDEI CTNAG 7 cut(s) 62, 492, 612, 639, 709, 1082, 1114
BstENI CCTNNNNNAGG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 2 cut(s) 35, 129
BstMAI GTCTC 4 cut(s) 67, 181, 712, 1117
BstMBI GATC 2 cut(s) 32, 126
BstMWI GCNNNNNNNGC 3 cut(s) 245, 404, 488
BstNI CCWGG 3 cut(s) 153, 345, 804
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 3 cut(s) 151, 343, 802
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 989, 1117
BstX2I RGATCY 1 cut(s) 32
BstXI CCANNNNNNTGG 2 cut(s) 188, 973
BstYI RGATCY 1 cut(s) 32
BstZ17I GTATAC 1 cut(s) 208
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 528
BtsI GCAGTG 2 cut(s) 84, 273
BtsIMutI CAGTG 7 cut(s) 84, 222, 273, 504, 702, 926, 978
Cac8I GCNNGC 4 cut(s) 280, 303, 771, 990
CaiI CAGNNNCTG 1 cut(s) 638
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 635, 806
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 2 cut(s) 421, 617
CviAII CATG 7 cut(s) 382, 394, 439, 682, 859, 1034, 1102
CviQI GTAC 2 cut(s) 421, 617
DdeI CTNAG 7 cut(s) 62, 492, 612, 639, 709, 1082, 1114
DpnI GATC 2 cut(s) 34, 128
DpnII GATC 2 cut(s) 32, 126
DrdI GACNNNNNNGTC 2 cut(s) 442, 677
DseDI GACNNNNNNGTC 2 cut(s) 442, 677
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 5 cut(s) 65, 83, 153, 460, 1071
EarI CTCTTC 5 cut(s) 65, 83, 153, 460, 1071
Ecl136II GAGCTC 1 cut(s) 988
Eco24I GRGCYC 1 cut(s) 990
Eco32I GATATC 1 cut(s) 954
Eco47I GGWCC 2 cut(s) 635, 806
Eco47III AGCGCT 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 988
Eco57I CTGAAG 3 cut(s) 44, 192, 246
EcoICRI GAGCTC 1 cut(s) 988
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoO109I RGGNCCY 2 cut(s) 635, 806
EcoRII CCWGG 3 cut(s) 151, 343, 802
EcoRV GATATC 1 cut(s) 954
EcoT38I GRGCYC 1 cut(s) 990
FaeI CATG 7 cut(s) 385, 397, 442, 685, 862, 1037, 1105
FalI AAGNNNNNCTT 8 cut(s) 62, 94, 317, 349, 924, 956, 1002, 1034
FatI CATG 7 cut(s) 381, 393, 438, 681, 858, 1033, 1101
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 3 cut(s) 408, 978, 1106
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 3 cut(s) 408, 978, 1106
GlaI GCGC 1 cut(s) 300
GluI GCNGC 3 cut(s) 408, 978, 1106
GsuI CTGGAG 2 cut(s) 366, 981
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 1 cut(s) 407
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 385, 397, 442, 685, 862, 1037, 1105
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 6 cut(s) 75, 104, 387, 499, 560, 837
Hpy166II GTNNAC 3 cut(s) 208, 670, 800
Hpy188I TCNGA 5 cut(s) 24, 131, 360, 488, 1046
Hpy188III TCNNGA 4 cut(s) 375, 538, 881, 960
Hpy8I GTNNAC 3 cut(s) 208, 670, 800
HpyAV CCTTC 5 cut(s) 221, 493, 535, 929, 1081
HpyCH4III ACNGT 4 cut(s) 535, 706, 723, 973
HpyCH4V TGCA 5 cut(s) 51, 89, 902, 1037, 1105
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 404, 488
HpyF3I CTNAG 7 cut(s) 62, 492, 612, 639, 709, 1082, 1114
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 385, 397, 442, 685, 862, 1037, 1105
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 2 cut(s) 32, 126
LguI GCTCTTC 2 cut(s) 153, 1071
LmnI GCTCC 4 cut(s) 236, 488, 588, 962
Lsp1109I GCAGC 2 cut(s) 989, 1117
LweI GCATC 3 cut(s) 291, 307, 889
MabI ACCWGGT 1 cut(s) 802
MaeIII GTNAC 3 cut(s) 220, 349, 1024
MalI GATC 2 cut(s) 34, 128
MboI GATC 2 cut(s) 32, 126
MboII GAAGA 9 cut(s) 37, 70, 82, 99, 102, 140, 477, 908, 1088
MfeI CAATTG 1 cut(s) 920
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 990
MluCI AATT 4 cut(s) 590, 687, 920, 1029
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 3 cut(s) 610, 697, 814
MnlI CCTC 5 cut(s) 521, 643, 692, 819, 877
MroXI GAANNNNTTC 1 cut(s) 876
MseI TTAA 1 cut(s) 1123
MspR9I CCNGG 3 cut(s) 153, 345, 804
MunI CAATTG 1 cut(s) 920
MvaI CCWGG 3 cut(s) 153, 345, 804
MwoI GCNNNNNNNGC 3 cut(s) 245, 404, 488
NdeII GATC 2 cut(s) 32, 126
NlaIII CATG 7 cut(s) 385, 397, 442, 685, 862, 1037, 1105
NlaIV GGNNCC 2 cut(s) 157, 964
NmuCI GTSAC 3 cut(s) 220, 349, 1024
NspI RCATGY 1 cut(s) 1105
PciSI GCTCTTC 2 cut(s) 153, 1071
PdmI GAANNNNTTC 1 cut(s) 876
PfeI GAWTC 5 cut(s) 104, 387, 499, 560, 837
PfoI TCCNGGA 2 cut(s) 151, 343
PkrI GCNGC 3 cut(s) 409, 979, 1107
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PpuMI RGGWCCY 2 cut(s) 635, 806
Psp124BI GAGCTC 1 cut(s) 990
Psp5II RGGWCCY 2 cut(s) 635, 806
Psp6I CCWGG 3 cut(s) 151, 343, 802
PspGI CCWGG 3 cut(s) 151, 343, 802
PspN4I GGNNCC 2 cut(s) 157, 964
PspPI GGNCC 2 cut(s) 635, 806
PspPPI RGGWCCY 2 cut(s) 635, 806
PstNI CAGNNNCTG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 2 cut(s) 422, 618
RsaNI GTAC 2 cut(s) 421, 617
SacI GAGCTC 1 cut(s) 990
SapI GCTCTTC 2 cut(s) 153, 1071
SaqAI TTAA 1 cut(s) 1123
SatI GCNGC 3 cut(s) 408, 978, 1106
Sau3AI GATC 2 cut(s) 32, 126
Sau96I GGNCC 2 cut(s) 635, 806
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 3 cut(s) 153, 345, 804
SduI GDGCHC 1 cut(s) 990
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 3 cut(s) 291, 307, 889
SfcI CTRYAG 1 cut(s) 630
SinI GGWCC 2 cut(s) 635, 806
SmlI CTYRAG 2 cut(s) 881, 983
SmoI CTYRAG 2 cut(s) 881, 983
Sse9I AATT 4 cut(s) 590, 687, 920, 1029
SsiI CCGC 2 cut(s) 408, 696
SstI GAGCTC 1 cut(s) 990
StyD4I CCNGG 3 cut(s) 151, 343, 802
TaaI ACNGT 4 cut(s) 535, 706, 723, 973
TaqI TCGA 1 cut(s) 815
TasI AATT 4 cut(s) 590, 687, 920, 1029
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 5 cut(s) 104, 387, 499, 560, 837
Tru1I TTAA 1 cut(s) 1123
Tru9I TTAA 1 cut(s) 1123
TscAI CASTG 7 cut(s) 91, 229, 280, 511, 709, 933, 978
TseFI GTSAC 3 cut(s) 220, 349, 1024
TseI GCWGC 2 cut(s) 977, 1105
Tsp45I GTSAC 3 cut(s) 220, 349, 1024
TspDTI ATGAA 4 cut(s) 69, 83, 428, 1022
TspRI CASTG 7 cut(s) 91, 229, 280, 511, 709, 933, 978
VpaK11BI GGWCC 2 cut(s) 635, 806
XagI CCTNNNNNAGG 1 cut(s) 516
XceI RCATGY 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.