Rh5DG268500

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001137
Physical Location & Seq
Reverse (-)
32542169 .. 32547361
5193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG268500.1

Sequence Viewer

Length: 324 bp
ATGCTTATACTCTTGAAACTGCTGTTTTATTCAGTATGCTCGAAACTACAGGATCTGAGATATGGTGACATCTTTGTAACGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGCGGTAAACCAGGTCCTCATTCGATTACTAGCAATGGGGTTGGATTCAAACCCAATATATTGGGCATGTTGAGCTACTTTGTATATGTGATTTTGCTGACAAAGTCTTCAACAGTGGTGGCAACTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

107

Amino Acids

11.4

Weight (kDa)

8.95

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 23 - 71 2.1e-10 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 2 cut(s) 93, 195
AclWI GGATC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 16, 241, 303
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
AlwI GGATC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 204
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 100, 165
BmrFI CCNGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 2 cut(s) 93, 195
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 2 cut(s) 100, 165
BspPI GGATC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 232
BssMI GATC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 120, 307
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 56
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 206
CsiI ACCWGGT 1 cut(s) 202
CspCI CAANNNNNGTGG 1 cut(s) 291
CviAII CATG 1 cut(s) 259
CviJI RGCY 2 cut(s) 166, 267
CviKI_1 RGCY 2 cut(s) 166, 267
DdeI CTNAG 1 cut(s) 56
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 262
FatI CATG 1 cut(s) 258
FspBI CTAG 1 cut(s) 222
Hin1II CATG 1 cut(s) 262
HinfI GANTC 1 cut(s) 237
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 120, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 35, 93, 153, 180, 189, 216
MabI ACCWGGT 1 cut(s) 202
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 65, 76
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 1 cut(s) 291
MflI RGATCY 1 cut(s) 52
MluCI AATT 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 94, 214
MnlI CCTC 2 cut(s) 89, 219
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 100, 165
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 262
PfeI GAWTC 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 295
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 100, 165
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 295
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 204
SetI ASST 2 cut(s) 208, 269
SexAI ACCWGGT 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 206
Sse9I AATT 1 cut(s) 84
SsiI CCGC 2 cut(s) 93, 195
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 120, 307
TaqI TCGA 2 cut(s) 41, 215
TasI AATT 1 cut(s) 84
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspRI CASTG 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 1 cut(s) 262
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.