RchiOBHm_Chr7g0210971

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001137
Physical Location & Seq
Reverse (-)
28305137 .. 28306133
997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18878

Sequence Viewer

Length: 570 bp
ATGATGTTTTGTTGCAAACCAGCACTTGCTATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGATCCAACATCAGGAAACATGCATGAGAATCAACATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGGTTGTGTATGAGAGCCTTAGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCCTGCCAATACTCAGGTACATTTTGAAACTACAGGACCAGAGATATGGGAGGATACTAATGGAAAAATATATGGAGTGAAGCTTGTTGAAAGTAATAATATACTAAATGGTGGTAAACTAGGTAGACCAATACTCAATTTCATATTTTTTACTGGTTTGACCTTATTTCAAATTCTTTCTTTCCTAAATGCTTTGTACAGTGTTCAGGGGCCTTTCTATTATTTAGAGTCAGTAGGAGAGTTGTCGAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

189

Amino Acids

21.05

Weight (kDa)

7.63

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 37 - 128 6.9e-18 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 439
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 486
AfaI GTAC 3 cut(s) 137, 333, 512
AfiI CCNNNNNNNGG 2 cut(s) 85, 233
AgsI TTSAA 4 cut(s) 37, 341, 404, 485
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 3 cut(s) 171, 206, 397
AluI AGCT 3 cut(s) 171, 206, 397
AlwI GGATC 1 cut(s) 70
AoxI GGCC 2 cut(s) 120, 524
ApoI RAATTY 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 350, 524
AvaII GGWCC 1 cut(s) 350
AxyI CCTNAGG 1 cut(s) 199
BauI CACGAG 1 cut(s) 166
BccI CCATC 2 cut(s) 136, 232
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 69
BciVI GTATCC 1 cut(s) 361
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 345
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 350, 524
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 90
BsaXI ACNNNNNCTCC 6 cut(s) 167, 197, 211, 234, 241, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 233
Bse1I ACTGG 1 cut(s) 472
Bse21I CCTNAGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 85, 233
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 198, 341
BseNI ACTGG 1 cut(s) 472
BshFI GGCC 2 cut(s) 122, 526
BslI CCNNNNNNNGG 2 cut(s) 85, 233
BsnI GGCC 2 cut(s) 122, 526
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 122, 526
BspCNI CTCAG 2 cut(s) 199, 340
BspLI GGNNCC 1 cut(s) 525
BspPI GGATC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 472
BssMI GATC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 166
Bst2BI CACGAG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 250, 515
BstAUI TGTACA 1 cut(s) 510
BstDEI CTNAG 3 cut(s) 199, 207, 327
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 119, 203
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 360
Bsu36I CCTNAGG 1 cut(s) 199
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 122, 526
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 219, 520
Cfr13I GGNCC 2 cut(s) 350, 524
Csp6I GTAC 3 cut(s) 136, 332, 511
CviAII CATG 4 cut(s) 93, 97, 109, 154
CviJI RGCY 9 cut(s) 57, 113, 122, 171, 197, 206, 260, 397, 526
CviKI_1 RGCY 9 cut(s) 57, 113, 122, 171, 197, 206, 260, 397, 526
CviQI GTAC 3 cut(s) 136, 332, 511
DdeI CTNAG 3 cut(s) 199, 207, 327
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 350
Eco81I CCTNAGG 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 98
FaeI CATG 4 cut(s) 96, 100, 112, 157
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FatI CATG 4 cut(s) 92, 96, 108, 153
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 434
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 2 cut(s) 122, 526
Hin1II CATG 4 cut(s) 96, 100, 112, 157
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 102, 214, 275, 542
Hpy166II GTNNAC 2 cut(s) 431, 440
Hpy188III TCNNGA 2 cut(s) 86, 253
Hpy8I GTNNAC 2 cut(s) 431, 440
HpyAV CCTTC 2 cut(s) 174, 250
HpyCH4III ACNGT 2 cut(s) 250, 515
HpyCH4V TGCA 2 cut(s) 15, 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 203
HpyF3I CTNAG 3 cut(s) 199, 207, 327
Hsp92II CATG 4 cut(s) 96, 100, 112, 157
Kzo9I GATC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 203, 303
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 434
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MluCI AATT 3 cut(s) 305, 451, 486
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 103, 325
MnlI CCTC 3 cut(s) 236, 237, 358
Mph1103I ATGCAT 1 cut(s) 98
MseI TTAA 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 119, 203
NdeII GATC 1 cut(s) 75
NlaIII CATG 4 cut(s) 96, 100, 112, 157
NlaIV GGNNCC 1 cut(s) 525
NsiI ATGCAT 1 cut(s) 98
NspI RCATGY 1 cut(s) 96
PfeI GAWTC 3 cut(s) 102, 214, 275
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 2 cut(s) 350, 524
RsaI GTAC 3 cut(s) 137, 333, 512
RsaNI GTAC 3 cut(s) 136, 332, 511
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 2 cut(s) 350, 524
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 69
SetI ASST 8 cut(s) 173, 185, 208, 270, 333, 399, 439, 479
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 350
Sse9I AATT 3 cut(s) 305, 451, 486
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 2 cut(s) 250, 515
TaqI TCGA 1 cut(s) 560
TasI AATT 3 cut(s) 305, 451, 486
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 3 cut(s) 102, 214, 275
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 2 cut(s) 226, 520
TspDTI ATGAA 2 cut(s) 143, 445
TspRI CASTG 2 cut(s) 226, 520
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 231
XapI RAATTY 1 cut(s) 486
XceI RCATGY 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 439
XspI CTAG 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.