RchiOBHm_Chr1g0327561

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001137
Physical Location & Seq
Reverse (-)
16432852 .. 16433460
609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55706

Sequence Viewer

Length: 405 bp
ATGATGTTTTGTTGCAGAGCAGCACTTGCTATGTTCAATGATGATGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGATCCAACATCAGGAAACATGAGAATCAACATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACAAGCTTGGAGAGAAGATTGTGTATGAGAGCCTTAGGAGCTGAGTTGATTCTCACTGAACCTCCAAAAGGGATGGGAGGAACTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCCAACAATTCTCAAACCTTGCCAATACTCAGGTACATTTTGAAACTACAGGACCACAGATATGGGAGGATACTAATGGAAAAGTTAACATCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

134

Amino Acids

14.88

Weight (kDa)

8.47

Isoelectric Point (pI)

30.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 5 - 133 3.3e-22 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 129
AfaI GTAC 2 cut(s) 146, 342
AfiI CCNNNNNNNGG 2 cut(s) 98, 242
AgsI TTSAA 2 cut(s) 37, 350
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 180, 215
AluI AGCT 2 cut(s) 180, 215
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 359
AvaII GGWCC 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 208
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 145, 241
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 69
BciVI GTATCC 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 2 cut(s) 21, 132
BlsI GCNGC 2 cut(s) 22, 133
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 90
BsaXI ACNNNNNCTCC 4 cut(s) 220, 243, 250, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 242
Bse21I CCTNAGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 98, 242
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 207, 350
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 98, 242
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 208, 349
BspPI GGATC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 141
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 26
BstDEI CTNAG 3 cut(s) 208, 216, 336
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 26, 128, 212
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 369
BstYI RGATCY 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 208
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 145, 341
CviAII CATG 3 cut(s) 106, 118, 163
CviJI RGCY 7 cut(s) 57, 122, 131, 180, 206, 215, 269
CviKI_1 RGCY 7 cut(s) 57, 122, 131, 180, 206, 215, 269
CviQI GTAC 2 cut(s) 145, 341
DdeI CTNAG 3 cut(s) 208, 216, 336
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 109, 121, 166
FaiI YATR 9 cut(s) 32, 107, 119, 128, 164, 200, 273, 305, 370
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FatI CATG 3 cut(s) 105, 117, 162
Fnu4HI GCNGC 2 cut(s) 21, 132
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 21, 132
GluI GCNGC 2 cut(s) 21, 132
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 3 cut(s) 109, 121, 166
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 3 cut(s) 111, 223, 284
HpaI GTTAAC 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 99, 262
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 128, 212
HpyF3I CTNAG 3 cut(s) 208, 216, 336
Hsp92II CATG 3 cut(s) 109, 121, 166
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 212, 312
LpnPI CCDG 5 cut(s) 54, 81, 84, 323, 342
Lsp1109I GCAGC 1 cut(s) 32
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 201
MflI RGATCY 1 cut(s) 88
MluCI AATT 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 116, 334
MnlI CCTC 3 cut(s) 245, 246, 367
MseI TTAA 2 cut(s) 62, 393
MslI CAYNNNNRTG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 26, 128, 212
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 109, 121, 166
PfeI GAWTC 3 cut(s) 111, 223, 284
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 2 cut(s) 22, 133
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 2 cut(s) 146, 342
RsaNI GTAC 2 cut(s) 145, 341
RseI CAYNNNNRTG 1 cut(s) 367
SaqAI TTAA 2 cut(s) 62, 393
SatI GCNGC 2 cut(s) 21, 132
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 69
SetI ASST 6 cut(s) 182, 217, 238, 279, 327, 342
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 367
Sse9I AATT 1 cut(s) 314
SsiI CCGC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 259
TasI AATT 1 cut(s) 314
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 3 cut(s) 111, 223, 284
Tru1I TTAA 2 cut(s) 62, 393
Tru9I TTAA 2 cut(s) 62, 393
TscAI CASTG 1 cut(s) 235
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 60, 152
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.