RchiOBHm_Chr5g0039681

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001137
Physical Location & Seq
Reverse (-)
34391470 .. 34393735
2266 bp
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UTR
Exon/CDS
Intron
PRQ31824

Sequence Viewer

Length: 282 bp
ATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTTTGATAGATCCAACATCAGGAAACATGAGAATCAGCATGGCTTTTGTGGCCGCAATGAAAGGGTACAAGATGGTTTTGACCATGCCGTCTTACACGAGCTTGGAGAGAAGAATGTGTATGAGAACCTTAGGAGCTGAGTTGATTCTCTCTGACCCTCCAAAAGGGATGGGAGGATCTGTCAAGAAGGCTTATGACCTTTTAGAATCCACTCCAAATGCCCTTATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

93

Amino Acids

10.13

Weight (kDa)

9.42

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 9 - 91 6.8e-13 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
AciI CCGC 1 cut(s) 102
AclWI GGATC 2 cut(s) 53, 232
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 68, 212
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 150, 185
AluI AGCT 2 cut(s) 150, 185
AlwI GGATC 2 cut(s) 53, 232
AoxI GGCC 1 cut(s) 99
AxyI CCTNAGG 1 cut(s) 178
BauI CACGAG 1 cut(s) 145
BccI CCATC 2 cut(s) 115, 211
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 39
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 212
Bse21I CCTNAGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 68, 212
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 68, 212
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 58, 224
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 178
BspPI GGATC 2 cut(s) 53, 232
BsrDI GCAATG 1 cut(s) 111
BssMI GATC 2 cut(s) 58, 224
BssSI CACGAG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 178, 186
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 61, 227
BstMBI GATC 2 cut(s) 58, 224
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstX2I RGATCY 2 cut(s) 58, 224
BstYI RGATCY 2 cut(s) 58, 224
Bsu36I CCTNAGG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 222
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 76, 88, 133
CviJI RGCY 6 cut(s) 27, 92, 101, 150, 185, 239
CviKI_1 RGCY 6 cut(s) 27, 92, 101, 150, 185, 239
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 178, 186
DpnI GATC 2 cut(s) 60, 226
DpnII GATC 2 cut(s) 58, 224
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 3 cut(s) 79, 91, 136
FaiI YATR 6 cut(s) 77, 89, 134, 170, 243, 275
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 3 cut(s) 75, 87, 132
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 3 cut(s) 79, 91, 136
HinfI GANTC 3 cut(s) 81, 193, 254
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 69, 232
HpyAV CCTTC 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 178, 186
Hsp92II CATG 3 cut(s) 79, 91, 136
Kzo9I GATC 2 cut(s) 58, 224
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 3 cut(s) 24, 51, 54
MalI GATC 2 cut(s) 60, 226
MboI GATC 2 cut(s) 58, 224
MboII GAAGA 1 cut(s) 171
MflI RGATCY 2 cut(s) 58, 224
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 2 cut(s) 215, 216
MseI TTAA 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 2 cut(s) 58, 224
NlaIII CATG 3 cut(s) 79, 91, 136
PfeI GAWTC 3 cut(s) 81, 193, 254
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 58, 224
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 58, 224
ScrFI CCNGG 1 cut(s) 39
SetI ASST 4 cut(s) 152, 179, 187, 249
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 37
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 3 cut(s) 81, 193, 254
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 122
XagI CCTNNNNNAGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.