Rh1DG250200

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001137
Physical Location & Seq
Forward (+)
46385765 .. 46387096
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG250200.1

Sequence Viewer

Length: 345 bp
ATGTTCAATGATGCTGAAAAGAAAGGCTTATTAACTCCTGGAGTGAAAACTCTGATAGATCCAACATCAGGAAACATGAGAATCAGCATGGCTTTTATGGCCGCAATGAAAGGGTACAAGATGTATCTCAAATCTCAATACCCTGATTGTAAGATATATGGAGTGGAGCTTGCTGAAAGTAATAATATACTAAATGGTGGTAAACTAGGTCCTCATTCGATTACTGGAAATGGGGTTGGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGCTACTTCATGTATATGATTTCGCTGACAAAGTCTTCAACACCAGTGGTAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

6.71

Isoelectric Point (pI)

14.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 7, 244, 325
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 169, 289
AluI AGCT 2 cut(s) 169, 289
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 229, 330
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 229, 330
BshFI GGCC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 68
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 229, 330
BssMI GATC 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 171
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 115
CspCI CAANNNNNGTGG 1 cut(s) 313
CviAII CATG 4 cut(s) 76, 88, 262, 296
CviJI RGCY 5 cut(s) 27, 92, 101, 169, 289
CviKI_1 RGCY 5 cut(s) 27, 92, 101, 169, 289
CviQI GTAC 1 cut(s) 115
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 4 cut(s) 79, 91, 265, 299
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 4 cut(s) 75, 87, 261, 295
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 4 cut(s) 79, 91, 265, 299
HinfI GANTC 2 cut(s) 81, 240
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 3 cut(s) 69, 284, 342
Hpy8I GTNNAC 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
Hsp92II CATG 4 cut(s) 79, 91, 265, 299
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 24, 51, 54, 156, 210
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 335
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 313
MflI RGATCY 1 cut(s) 58
MmeI TCCRAC 2 cut(s) 86, 217
MnlI CCTC 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 1 cut(s) 58
NlaIII CATG 4 cut(s) 79, 91, 265, 299
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 81, 240
PflFI GACNNNGTC 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspPI GGNCC 1 cut(s) 209
PspPPI RGGWCCY 1 cut(s) 209
PsuI RGATCY 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 317
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 39
SetI ASST 3 cut(s) 171, 211, 291
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 37
TaqI TCGA 1 cut(s) 218
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 81, 240
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 122, 284
TspRI CASTG 1 cut(s) 337
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.