RLG00000002082

Belongs to the cysteine synthase cystathionine beta- synthase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
25196901 .. 25197903
1003 bp
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UTR
Exon/CDS
Intron
RLM00000002082

Sequence Viewer

Length: 405 bp
ATGATGTTTTGTTGCAGACCAGCACTTGCTATGTTCAATGATGCTGAAAAGAAAGGTTTATTAACTCCTGGAGTGAAAACTCTGATAGAGCCAACATCAGGAAACATGGGAATCAGCATGGCTTTTATAGCCATAGTGAAAGGGTACAAGATGGTTTTGACCATGCTGTCTTACACGAGCTTGGAGAGAAGAATGTGTATAAGAGCCTTCGGAGCTGAGTTGATTCTCACTGACCCTCCAAAAGGGATGGGAGGAACTGTACATTCTGAAACTGCAGGAGTTGAGATATGGGAGGATACTAATGGAAAAGTTGACATCTTTGTAATGGGAATTGGTAGCGGAGGCACCATCTCTGGAGTTGGACAGTATCTCAAATCTCAAAACCCTGATTGTAACAGTCAGTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

14.35

Weight (kDa)

6.55

Isoelectric Point (pI)

20.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 5 - 78 2.6e-12 Pyridoxal-phosphate dependent enzyme
PALP PF00291 90 - 131 1.5e-10 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 344
AciI CCGC 1 cut(s) 339
AfaI GTAC 2 cut(s) 146, 261
AfiI CCNNNNNNNGG 2 cut(s) 98, 242
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 180, 215
AluI AGCT 2 cut(s) 180, 215
BanI GGYRCC 1 cut(s) 344
BauI CACGAG 1 cut(s) 175
BccI CCATC 3 cut(s) 145, 241, 356
BciT130I CCWGG 1 cut(s) 69
BciVI GTATCC 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 90, 375
BsaXI ACNNNNNCTCC 4 cut(s) 220, 243, 250, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 242
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 98, 242
BseMII CTCAG 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 98, 242
Bsp1407I TGTACA 1 cut(s) 259
BspACI CCGC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 259
BssSI CACGAG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 259, 366, 398
BstAUI TGTACA 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 216
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 128, 212
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 273
BsuI GTATCC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 228
Csp6I GTAC 2 cut(s) 145, 260
CviAII CATG 3 cut(s) 106, 118, 163
CviJI RGCY 6 cut(s) 91, 122, 131, 180, 206, 215
CviKI_1 RGCY 6 cut(s) 91, 122, 131, 180, 206, 215
CviQI GTAC 2 cut(s) 145, 260
DdeI CTNAG 1 cut(s) 216
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 109, 121, 166
FaiI YATR 8 cut(s) 32, 107, 119, 128, 134, 164, 200, 289
FatI CATG 3 cut(s) 105, 117, 162
FokI GGATG 1 cut(s) 259
GsuI CTGGAG 2 cut(s) 90, 375
Hin1II CATG 3 cut(s) 109, 121, 166
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 2 cut(s) 111, 223
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 3 cut(s) 84, 212, 268
Hpy188III TCNNGA 2 cut(s) 99, 354
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 3 cut(s) 259, 366, 398
HpyCH4V TGCA 2 cut(s) 15, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 212
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 3 cut(s) 109, 121, 166
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 7 cut(s) 33, 54, 81, 84, 261, 339, 399
LweI GCATC 1 cut(s) 31
MaeIII GTNAC 1 cut(s) 392
MboII GAAGA 1 cut(s) 201
MluCI AATT 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 4 cut(s) 245, 246, 286, 335
MseI TTAA 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 128, 212
NlaIII CATG 3 cut(s) 109, 121, 166
NlaIV GGNNCC 1 cut(s) 346
PfeI GAWTC 2 cut(s) 111, 223
PfoI TCCNGGA 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 2 cut(s) 146, 261
RsaNI GTAC 2 cut(s) 145, 260
SaqAI TTAA 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 69
SetI ASST 3 cut(s) 58, 182, 217
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 273
Sse9I AATT 1 cut(s) 330
SsiI CCGC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 259, 366, 398
TasI AATT 1 cut(s) 330
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 2 cut(s) 111, 223
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 235
TspRI CASTG 1 cut(s) 235
XagI CCTNNNNNAGG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.